Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4947g00003 ATGATTTCTTCTGTGGCCTTTCAACCGTCTCTTCCCGCCGTTAACTTCTCCGGTAAAGCCGCGACCTCGCCGTCCTGTAAGGCCAGATCCCGCCCAATAGTCGCCTTCGCCACCGCTACCGCCACTGCAACCGAGGAAGCTCGATCTTCCTGGACGGAGAAACCACGCCCATCGTATCTGAACTCCTCATGCTCTTCTCACTACGATATCCTCGGCATCCCCGCCGGTGCCTCCGTCCAGGAAATCAAGGCCGCGTACCGGCGGTTGGCCAGAGTCTGCCACCCGGACGTGGCGGCGATCGACCGGAAAAATTCCTCCGCGGACGAATTCATGAAGATCCACGCCGCGTACTCCACTCTCTCGGATCCTGACAAACGCGCCAACTACGACCGGAGCCTATTCCGGCGACAACGGCCGCTGTCGACCGCGGCGGTTTTTTCCGGCTACACGCGCCGGAACTGGGAAACGGATCAGTGCTGGTAA 483 0.6025 MISSVAFQPSLPAVNFSGKAATSPSCKARSRPIVAFATATATATEEARSSWTEKPRPSYLNSSCSSHYDILGIPAGASVQEIKAAYRRLARVCHPDVAAIDRKNSSADEFMKIHAAYSTLSDPDKRANYDRSLFRRQRPLSTAAVFSGYTRRNWETDQCW 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4947g00003 160 ProSiteProfiles dnaJ domain profile. 66 133 IPR001623 -
Vium4947g00003 160 SUPERFAMILY Chaperone J-domain 63 136 IPR036869 -
Vium4947g00003 160 ProSitePatterns Nt-dnaJ domain signature. 110 129 IPR018253 -
Vium4947g00003 160 CDD DnaJ 67 122 IPR001623 -
Vium4947g00003 160 PRINTS DnaJ domain signature 86 101 IPR001623 -
Vium4947g00003 160 PRINTS DnaJ domain signature 105 125 IPR001623 -
Vium4947g00003 160 PRINTS DnaJ domain signature 68 86 IPR001623 -
Vium4947g00003 160 Pfam DnaJ domain 67 130 IPR001623 -
Vium4947g00003 160 Gene3D DnaJ domain 57 152 IPR036869 -
Vium4947g00003 160 SMART dnaj_3 65 125 IPR001623 -
Vium4947g00003 160 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 19 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4947g00003 Vium-Chr4947 40033 40823 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4947g00003 67 130 C2H2 Transcription Factor Family AT1G74250 42.647 1.26e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4947g00003 - - vra:106777082 306.605