Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4947g00002 ATGGGCATCTGTTTTTCAAGCACCAAGGTCAGCGGCTCCAGCAGCAACAACGCTGGTGCTTCCAATCGCAACCGCAAATGCTCGGAGCCCGTGGCTGCGCAGGGGGAGCCCGCGGAGCATAAGCAACAGTCGTCGCATGGTCAACGGCGGCGCGAAGAATCGCGGAAGCCCCCACGCACCAAGGAGAAAGCGAACGGGCGTCGCCCGGGGGGGACGCTGCCTTGCGGAAAGCGCACGGATTTTGGATACGAGAAAGACTTTGACAAGAGATTCTCGCTCGGGAAGTTGTTGGGACACGGCCAATTCGGTTACACTTACGTTGGGATAGACAAAGCAAATGGGGATCGTGTCGCCGTTAAGAGACTCGAGAAGAACAAGATGGTTCTCCCTATAGCGGTTGAGGATGTTAAGCGTGAAGTCAAGATATTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAGTTCTACAATGCTTTTGAGGATGATTCATACGTGTACATAGTTATGGAGTTATGTGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAGAAGGACAGTCGTTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAGATGCTTAAGGTTGCGGCTGAGTGTCATTTACATGGGTTGGTTCATCGGGACATGAAACCAGAGAATTTTCTTTTGAAATCAACCAGAGAAGATTCACCTTTAAAAGCTACCGATTTTGGTTTGTCTGATTTCATAAAGCCTGGGAAGAGGTTTCAAGACATTGTTGGCAGTGCTTACTATGTTGCACCAGAAGTGTTAAAACGAAAGTCAGGTCCTGAGTCAGATGTATGGAGTATTGGTGTGATTACATACATATTGCTTTGTGGGAGACGTCCATTTTGGGATAAGACAGAGGATGGTATCTTCAAGGAGGTCTTACGGAACAAGCCTGATTTTCGGCGGAAACCATGGCCAACCATAAGCAATGGTGCAAAAGATTTTGTGAAAAAATTGTTGGTAAAAGATCCCCGTGCAAGATATACTGCTGCTCAGGCTCTATCACATCCATGGGTTAGAGAAGGGGGAGAGGCATTAGAGATTCCTATTGACATATCTGTCCTGAACAACATGCGACAGTTTGTGAAGTATAGTCGGTTGAAACAGTTTGCACTAAGGGCATTGGCGAGCACACTTAATGAAGAAGAGTTGTCTGATCTGAAAGATCAGTTTGATGCAATAGACGTGGACAAAAATGGTTCTATCAGTCTTGAAGAGATGAGACAGGCTCTTGCTCAAGATCTCCCTTGGAAATTGAAAGAATCACGTGTGCTAGAGATATTACAAGCGATAGACAGCAACACAGACGGGCTAGTGGATTTCTCCGAGTTTGTAGCAGCTACATTACATGTACATCAGTTGGAGGAACATGATTCTTTTAAGTGGCAGCAACGGTCACAAGCTGCTTTTGAGAAATTTGACTTGGACAAGGATGGCTACATTACTCCAGATGAACTTAGAATGCACACGGGTTTGAGAGGGTCCATTGATCCATTGCTTGAGGAAGCCGACATTGATAAAGATGGAAAGATCAGCTTACCAGAATTCCGCAGACTTTTAAGAACTGCAAGCATCGGTTCTCGAAACGTGTTGAGCCCGAATCGCTTGCATCGAAAGATGTAG 1659 0.4611 MGICFSSTKVSGSSSNNAGASNRNRKCSEPVAAQGEPAEHKQQSSHGQRRREESRKPPRTKEKANGRRPGGTLPCGKRTDFGYEKDFDKRFSLGKLLGHGQFGYTYVGIDKANGDRVAVKRLEKNKMVLPIAVEDVKREVKILKELTGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILAKKDSRYTEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLLKSTREDSPLKATDFGLSDFIKPGKRFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNGAKDFVKKLLVKDPRARYTAAQALSHPWVREGGEALEIPIDISVLNNMRQFVKYSRLKQFALRALASTLNEEELSDLKDQFDAIDVDKNGSISLEEMRQALAQDLPWKLKESRVLEILQAIDSNTDGLVDFSEFVAATLHVHQLEEHDSFKWQQRSQAAFEKFDLDKDGYITPDELRMHTGLRGSIDPLLEEADIDKDGKISLPEFRRLLRTASIGSRNVLSPNRLHRKM 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4947g00002 552 PANTHER SERINE/THREONINE-PROTEIN KINASE 68 520 - -
Vium4947g00002 552 FunFam calcium-dependent protein kinase 28-like 177 370 - -
Vium4947g00002 552 ProSiteProfiles EF-hand calcium-binding domain profile. 511 538 IPR002048 GO:0005509
Vium4947g00002 552 FunFam Calcium-dependent protein kinase 28 392 461 - -
Vium4947g00002 552 ProSitePatterns EF-hand calcium-binding domain. 516 528 IPR018247 -
Vium4947g00002 552 ProSiteProfiles EF-hand calcium-binding domain profile. 473 508 IPR002048 GO:0005509
Vium4947g00002 552 MobiDBLite consensus disorder prediction 1 28 - -
Vium4947g00002 552 Gene3D Transferase(Phosphotransferase) domain 1 177 371 - -
Vium4947g00002 552 ProSitePatterns EF-hand calcium-binding domain. 486 498 IPR018247 -
Vium4947g00002 552 ProSitePatterns Protein kinases ATP-binding region signature. 97 120 IPR017441 GO:0005524
Vium4947g00002 552 Gene3D Phosphorylase Kinase; domain 1 84 176 - -
Vium4947g00002 552 ProSiteProfiles Protein kinase domain profile. 91 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4947g00002 552 SMART serkin_6 91 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4947g00002 552 FunFam CDPK-related kinase 1 84 176 - -
Vium4947g00002 552 Pfam Protein kinase domain 93 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4947g00002 552 ProSiteProfiles EF-hand calcium-binding domain profile. 394 429 IPR002048 GO:0005509
Vium4947g00002 552 Gene3D - 392 461 - -
Vium4947g00002 552 SUPERFAMILY Protein kinase-like (PK-like) 88 363 IPR011009 -
Vium4947g00002 552 ProSitePatterns EF-hand calcium-binding domain. 407 419 IPR018247 -
Vium4947g00002 552 SMART efh_1 435 463 IPR002048 GO:0005509
Vium4947g00002 552 SMART efh_1 477 505 IPR002048 GO:0005509
Vium4947g00002 552 SMART efh_1 507 535 IPR002048 GO:0005509
Vium4947g00002 552 SMART efh_1 398 426 IPR002048 GO:0005509
Vium4947g00002 552 ProSiteProfiles EF-hand calcium-binding domain profile. 431 466 IPR002048 GO:0005509
Vium4947g00002 552 MobiDBLite consensus disorder prediction 1 77 - -
Vium4947g00002 552 ProSitePatterns EF-hand calcium-binding domain. 444 456 IPR018247 -
Vium4947g00002 552 SUPERFAMILY EF-hand 380 533 IPR011992 -
Vium4947g00002 552 Pfam EF-hand domain pair 397 460 IPR002048 GO:0005509
Vium4947g00002 552 Pfam EF-hand domain pair 479 532 IPR002048 GO:0005509
Vium4947g00002 552 MobiDBLite consensus disorder prediction 42 66 - -
Vium4947g00002 552 Gene3D - 372 531 - -
Vium4947g00002 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Vium4947g00002 552 CDD STKc_CAMK 90 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4947g00002 Vium-Chr4947 23102 28985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4947g00002 1 545 EF-hand Containing Proteins AT2G17890 76.950 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium4947g00002 Pkinase 1.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4947g00002 K13412 - gmx:100817249 981.089