Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4942g00003 CAAAAGTGTGAAGAATATGAGCATCAATTAAAAGAGTTAAGAAATAAGGTTAAGGAACTTGAGGTTTCTTCGGATTCAAAAGATCAGAAGTGGAACATGAAAATGAACCGATTTCTGACTGTCATAACATTTCAATTCAGTTCACTACAGAAAATGAAGTTATCTTTGGAATCCACTAAGCAAAATGTAATAAAAGAGCAAACGGTTTATGCAGGGGAGTTGGATCTATTGGGTGTAAAACTTAAACCACTTCTACAGGCAGCTGAAAACTACCACGTTGTTATGGCTGAAAATAAAAAACTGTTCAATGAGATTCAAGAACTAAAAGGAAATATCAGAGTATATTGTCGAATTCGACCATCGGCAATAGGAAAATTGGAAAAAGAGTCTATTGTTGAACACGTTGGTGAAAATGATTTGGTTGTGGCAAATCCATCCAAAGAAGGAAAAGATACTCTTCGATCATTTAAATTTAACAGGGTTTTCAACCCTGCCGCAACTCAAGCGGAGGTATACTCCGACATCCAAGACTTCACTAGATCAGTTCTAGATGGGTATAATGTGTGTATATTTGCTTATGGTCAAACTGGTTCAGGGAAAACTTATACAATGACTGGTCCAAATGGGGCAACAAGCGAGACTATCGGTGTTAACTATCGAGCTCTAAATGACCTCTTCAGGATTTCCACAAGTAGACAAAATATAGTGGAATATGAGATCGGAGTTCAAATGGTTGAGATATATAACGAGCAAGTCCGTGACTTGTTAACAACATATGCTTCACCAAAAAGACTTGGGATATTGACTCAATCTCGACCAAATGGCTTAGTAGTCCCAGATGCTAGCTTGTTCCCAGTGAAATTACCTTCAGATGTTATTAAGCTAATGGAAATTGGACTTAAAAATAGAGCCATTGCTGCAACTGCTATGAATGAACGAAGTAGTCGTTCTCACAGTGTTGTCTCAGTTCACGTTACCGGGAAGGACTTAAAGACTGGTTGCACTATGGCTGGTAATCTTCATTTGGTAGATTTGGCTGGAAGTGAAAGAGTAGATCGTTCTGAAGTAATTGGGGATAGGCTCAAAGAAGCACAGCATATAAACAGATCACTAGCTGCCCTTGGAGATGTTATTTTTTCCCTTTCTCAAAAGAGCTCTCATGTACCATACAGAAACAGCAAGCTTACTCAACTTCTACAAACTTCTCTTGGTGGTCAAGCAAAGACGCTCATGTTCGTCCAAATCAATTCAGACGTAAGTTCATATTCTGAAACTCTGAGCACTTTAAAGTTTGCTGAGAGGGTTTCTGGAGTTGAATTAGGAGCTGCACGAAGTAACAAAGAGGGCAAAGACTTTAGAGAAATGATGGAACAGGTGTCTTCTTTGAAGAGCTCTATTTTGGCAAAAGATGAGGAGATTGAGAGGCTTCAAGCCATGAAAGGTTTAGCTGGTAGCAGAGTTAAGCGAAATATAATTCCACGAAGTAGAAGTAGTATCCAGTTACAATCTGCTAGCCCCCAACCAATTGATGATCATGCACAACAAAATGATTTTGTTGCAACTGCAGAAACTTCAGGATGTACAGATTCTGATTTTGACGGAAGATCAAGTGATTTTTCTGACGGTGGTGTTGCTGCAGGCACAGAAACTGATGGTTCTGAAAATTCCAGTCTCACTGAAGTCCCAAAACCACCATCAGAGAAGATGTCTAAAGGACTTCGCAGAACTGTTCAAGCGATGAGGAAATTTGGCCGAACTTCATCAAACACAATCCCTACAATCCCCACCGCCGGCCCAGTAAAGGAACCAGTGAAGAAGTCATCAAGTATTAAAAAAAGCATGAGTATAGGCACCCTTAAGCCTCCAAAACTGTGGAAGTAA 1881 0.3966 QKCEEYEHQLKELRNKVKELEVSSDSKDQKWNMKMNRFLTVITFQFSSLQKMKLSLESTKQNVIKEQTVYAGELDLLGVKLKPLLQAAENYHVVMAENKKLFNEIQELKGNIRVYCRIRPSAIGKLEKESIVEHVGENDLVVANPSKEGKDTLRSFKFNRVFNPAATQAEVYSDIQDFTRSVLDGYNVCIFAYGQTGSGKTYTMTGPNGATSETIGVNYRALNDLFRISTSRQNIVEYEIGVQMVEIYNEQVRDLLTTYASPKRLGILTQSRPNGLVVPDASLFPVKLPSDVIKLMEIGLKNRAIAATAMNERSSRSHSVVSVHVTGKDLKTGCTMAGNLHLVDLAGSERVDRSEVIGDRLKEAQHINRSLAALGDVIFSLSQKSSHVPYRNSKLTQLLQTSLGGQAKTLMFVQINSDVSSYSETLSTLKFAERVSGVELGAARSNKEGKDFREMMEQVSSLKSSILAKDEEIERLQAMKGLAGSRVKRNIIPRSRSSIQLQSASPQPIDDHAQQNDFVATAETSGCTDSDFDGRSSDFSDGGVAAGTETDGSENSSLTEVPKPPSEKMSKGLRRTVQAMRKFGRTSSNTIPTIPTAGPVKEPVKKSSSIKKSMSIGTLKPPKLWK 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4942g00003 626 SMART kinesin_4 109 446 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4942g00003 626 FunFam p-loop containing nucleoside triphosphate hydrolases superfamily protein 53 440 - -
Vium4942g00003 626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 476 IPR027417 -
Vium4942g00003 626 PRINTS Kinesin heavy chain signature 308 325 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4942g00003 626 PRINTS Kinesin heavy chain signature 185 206 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4942g00003 626 PRINTS Kinesin heavy chain signature 339 357 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4942g00003 626 PRINTS Kinesin heavy chain signature 388 409 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4942g00003 626 Gene3D Kinesin motor domain 54 440 IPR036961 -
Vium4942g00003 626 Pfam Kinesin motor domain 118 436 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4942g00003 626 ProSiteProfiles Kinesin motor domain profile. 111 438 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4942g00003 626 Coils Coil 3 30 - -
Vium4942g00003 626 MobiDBLite consensus disorder prediction 524 626 - -
Vium4942g00003 626 MobiDBLite consensus disorder prediction 549 563 - -
Vium4942g00003 626 PANTHER KINESIN-LIKE PROTEIN KLP-3 9 559 IPR027640 GO:0003777|GO:0007018
Vium4942g00003 626 MobiDBLite consensus disorder prediction 581 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4942g00003 Vium-Chr4942 5998 9011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4942g00003 9 438 Calmodulin-binding Proteins AT5G65930 37.071 1.99e-71 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4942g00003 K10406 - gmx:100819914 889.026