Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4942g00002 ATGCACACACTTGGGATATTGACTCAATCTCGACCAAATGGCTTAGTAGTCCCAGATGCTAGCTTGTTCCCAGTGAAATTACCTTCAGATGTTATTAAGCTAATGGAAATTGGACTTAAAAATAGAGCCATTGCTGCAACTGCTATGAATGAACGAAGTAGTCGTTCTCACAGTGTTGTCTCAGTTCACGTTACCGGGAAGGACTTAAAGACTGGTTGCACTATGGCTGGTAATCTTCATTTGGTAGATTTGGCTGGAAGTGAAAGAGTAGATCGTTCTGAAGTAATTGGGGATAGGCTCAAAGAAGCACAGCATATAAACAGATCACTAGCTGCCCTTGGAGATGTTATTTTTTCCCTTTCTCAAAAGAGCTCTCATGTACCATACAGAAACAGCAAGCTTACTCAACTTCTACAAACTTCTCTTGGTGGTCAAGCAAAGACGCTCATGTTCGTCCAAATCAATTCAGACGTAAGTTCATATTCTGAAACTCTGAGCACTTTAAAGTTTGCTGAGAGGGTTTCTGGAGTTGAATTAGGAGCTGCACGAAGTAACAAAGAGGGCAAAGACTTTAGAGAAATGATGGAACAGGTGTCTTCTTTGAAGAGCTCTATTTTGGCAAAAGATGAGGAGATTGAGAGGCTTCAAGCCATGAAAGGTTTAGCTGGTAGCAGAGTTAAGCGAAATATAATTCCACGAAGTAGAAGTAGTATCCAGTTACAATCTGCTAGCCCCCAACCAATTGATGATCATGCACAACAAAATGATTTTGTTGCAACTGCAGAAACTTCAGGATGTACAGATTCTGATTTTGACGGAAGATCAAGTGATTTTTCTGACGGTGGTGTTGCTGCAGGCACAGAAACTGATGGTTCTGAAAATTCCAGTCTCACTGAAGTCCCAAAACCACCATCAGAGAAGATGTCTAAAGGACTTCGCAGAACTGTTCAAGCGATGAGGAAATTTGGCCGAACTTCATCAAACACAATCCCTACAATCCCCACCGCCGGCCCAGTAAAGGAACCAGTGAAGAAGTCATCAAGTATTAAAAAAAGCATGAGTATAGGCACCCTTAAGCCTCCAAAACTGTGGAAGTAA 1098 0.4171 MHTLGILTQSRPNGLVVPDASLFPVKLPSDVIKLMEIGLKNRAIAATAMNERSSRSHSVVSVHVTGKDLKTGCTMAGNLHLVDLAGSERVDRSEVIGDRLKEAQHINRSLAALGDVIFSLSQKSSHVPYRNSKLTQLLQTSLGGQAKTLMFVQINSDVSSYSETLSTLKFAERVSGVELGAARSNKEGKDFREMMEQVSSLKSSILAKDEEIERLQAMKGLAGSRVKRNIIPRSRSSIQLQSASPQPIDDHAQQNDFVATAETSGCTDSDFDGRSSDFSDGGVAAGTETDGSENSSLTEVPKPPSEKMSKGLRRTVQAMRKFGRTSSNTIPTIPTAGPVKEPVKKSSSIKKSMSIGTLKPPKLWK 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4942g00002 365 FunFam Kinesin-related protein3 14 219 - -
Vium4942g00002 365 PANTHER KINESIN-LIKE PROTEIN KLP-3 9 298 IPR027640 GO:0003777|GO:0007018
Vium4942g00002 365 MobiDBLite consensus disorder prediction 288 302 - -
Vium4942g00002 365 MobiDBLite consensus disorder prediction 263 365 - -
Vium4942g00002 365 PRINTS Kinesin heavy chain signature 78 96 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4942g00002 365 PRINTS Kinesin heavy chain signature 47 64 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4942g00002 365 PRINTS Kinesin heavy chain signature 127 148 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4942g00002 365 MobiDBLite consensus disorder prediction 320 334 - -
Vium4942g00002 365 Pfam Kinesin motor domain 11 175 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4942g00002 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 215 IPR027417 -
Vium4942g00002 365 SMART kinesin_4 1 185 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4942g00002 365 ProSiteProfiles Kinesin motor domain profile. 1 177 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4942g00002 365 Gene3D Kinesin motor domain 3 219 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4942g00002 Vium-Chr4942 3560 5357 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4942g00002 14 177 Calmodulin-binding Proteins AT5G65930 47.273 1.51e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4942g00002 K10406 - gmx:100819914 463.381