Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4940g00005 ATGGAGAGCATCACAACACAAAAAATTAGTGTTGATGGCATAATGGGTAACACAAAAGTTGACCAACTGAGCCAAGATCAAGAAGGAAATAACTTTGCTAAAATGATGGAGGTAGGCTTAATTCCAGCAACTATCAGTGCAATGATAGATCAAACAGAAGTTGATCAGCCGGTCCATGATAAAACTCAAACACAGAGAAGCTTTCATGAGAACTTACAGGATGGATGTCAAGGTGAAATAGTTTTGGTGAATTCGAAGTCCTCTGCATGCTCTATTTGTAGAAGTAGACGACCAAACAATGCATGCTCAAAAGACTTTACTTATGATGAACTTCTAGAAGCTACAGAAGGATTTTCCACTGAGAACTCTCTATCTGTAAATGAAGATGGACCTACTTTCCAAGGCCTTCTAGAGGGACGGGTAAAAATTGTTGTTAAGAAATATCAAGTCAACACCTCCCAAGAACAGAAGATAATAAACTCAGAAGCAAAGCTGCTCATCAGTGCTAGACATAAAAATGTGGTCATGCTGTTGGGTTTATGTACAAATGAAAGCCAACTGATGGTTGTATTTGAGAAAGTATGCAACGGTTCACTTGACCAGTACCTAACAAGGGGAAGTTTCGAGTCATTGACTTGGAAGCAAAGGCTGAAAGTAATAATGGGTACTGCCAGAGGTTTAAAGTACCTACATGGGAAAGACATAATCCATGGAAATATAAAACCAAGTAATATTCTTCTAACACACGAGTTTGACCCAATGATTGGAGATTTCCACTTCGGACAACAGAAAGTTGGACCAAAGAAATCCAGAAAAGATAAAAGTGTAAGAAATTCTGGATATGCAGCACCTGAGTATCTGGAAAATGGAAAACTATCTTACAAGACAGATGTATATTCCTTTGGAGTGGTTCTTTTGGAGCTGATCAGTGGCCGGAGGGCTGCGGACAAATTACCAGATGGAAAAAGCCTAGTTAACTGGGCCAGGCCCCTACTGACAGGAAAGAAGTACCACATTTTGTTGGATGGGAAAATCAGTAACTCTTGTGAAGAAGAAAAGCTAGTATGGTTGGTCCAAGTAACAGAACAATGTCTCAAAAAGAATCCTAATGATAGATATTCGATGAATGTGGTCCTATCTTCCTTACAAGACATAGAAGAATCAACTGAGTGTTGTGTAATTCAAGATTCTTCTCCAGAAAAGTCATATTCAAATGGTCTCCCCACGAGTAGTACACAAGGTCAAATGAAGGCCGATCTAGGGAAGAAACAGGAACAAGAATTGATCCACAGAAACCAATACAAGGAAGAAAGCAGTCCAAGATTGACAGTCAAAACCAATCACATGAAAGGTCATAGAAATGAAGATCAAATGATACAGGGGGAAGAAGATGTGCAGAGGAGTCCTTATGAGGAGATGTTCGGGGTAAGACCTATCAGCAATGGCATGATTGATCAGATAAACCCTGTACAACAATTCCAGGAAAAACTGCACATTAAGGGAAGCTTTGAGATAGAAGAAATGAGTAAAAATGTAGATAAACAACAAAAGGTGAGCAAGGATAAAAAACAAATACAGGGAAGCTGTGATGATAGTTTATTGAATGGGATTGAAGGCAAAATCATTTTGGGAAATTCAAAGTCTTATGCTTGCTCTATCTGCAAAAGTAGGCGACCAAACAGTAGATTGCAAAGGAAATATACTTATGAAGAGCTTCAAGCTTGTACAGAAGGATTTTCAGTTAAGTACTCTCTATGTGAAGGTGAATATGGACCTGCTTTCAGAGGCCAGCTAGAGAATAACCAGGAAATAGTGATTAAGCAACATGCGTTCACAAACTTACAGGAGCAGAAGGTGTTCATGTCAGAATTCCAATTGCTTATAAATGCCAGACATGAAAACGTGATAATGCTGTTGGGTTCATGCATACGATTAAGTCAATTGCTGATTGTATATGAGAAGGCATGCAACGGTTCTCTTGACCTGTACTTATCAAGAGAAAGTGGTAGAACACTGACTTGGGGAGAAAGGGTGAAAGTTGCAATAGGTGTCGCCAGAGGTCTAAACTATCTACATGAGAATAATATAGCACATGGAGGAATAAAACCAAGTAACATTCTTCTAAATCATGAGTTGAAACCACTGGTAGGAGACTTTGCGTTTGGAAAAGAAAGATGTGAACTGAAAAATCTCAAAAGACTTAAAAGAATGAGGAATTGTGGACGAACTGCACCAGAGTGTTGTGAGAGTGGAATACTATCGACTAAGGCAGATGTATACTCTTTTGGTATAGTTCTTGTGGAGTTGATCACTGGCCGTATGATTTCAGAAAAAGTATCAGGAGAGAGATGTCCCACTGAATGTATAAGGTCACTTCTTGAAGAACAAAAGTTTCTACAGTTGGTAGATCCCAAAGTCAGCAGCTCCTATGATGAGCAAGAACTAGTTTCATTGGTCCACGTGATAGAAAATTGTCTGAAAAAGAATCCAGAAGAAAGGTTTACAATGGATATGGTTGTCTCTGCACTGCCATCTATAGTAGATTGCAGTGACATATATGCAAAGGAAGACTTTTCACCAGAAAACTCGCATGTTTCAGAAGTAACAAACTCAAAAGTGAAGGAGGAACCACCAAATGAAGAAGATTTAAGCATAGAGAATAGTGAAGAAAAAGGGGACAACATAACGTACATTGGAGGCAATGAAACAGAAATACGTCAAGAGTGTGACATCAACCCAACTGGTTGTGAAAATAGTAAGGAAACAGAAGAAAAAGAAAGCTTAAGCACCAAGATATGTTGGGAAGGTTGTTCATCCTATGGTGGAGCTAGAGAATTTTATCTCGAAGGGATCAAAGAGTACACAGCATGTGAAGAACTTTTCGGCTTTTGTGATTTAATTTGA 2904 0.3888 MESITTQKISVDGIMGNTKVDQLSQDQEGNNFAKMMEVGLIPATISAMIDQTEVDQPVHDKTQTQRSFHENLQDGCQGEIVLVNSKSSACSICRSRRPNNACSKDFTYDELLEATEGFSTENSLSVNEDGPTFQGLLEGRVKIVVKKYQVNTSQEQKIINSEAKLLISARHKNVVMLLGLCTNESQLMVVFEKVCNGSLDQYLTRGSFESLTWKQRLKVIMGTARGLKYLHGKDIIHGNIKPSNILLTHEFDPMIGDFHFGQQKVGPKKSRKDKSVRNSGYAAPEYLENGKLSYKTDVYSFGVVLLELISGRRAADKLPDGKSLVNWARPLLTGKKYHILLDGKISNSCEEEKLVWLVQVTEQCLKKNPNDRYSMNVVLSSLQDIEESTECCVIQDSSPEKSYSNGLPTSSTQGQMKADLGKKQEQELIHRNQYKEESSPRLTVKTNHMKGHRNEDQMIQGEEDVQRSPYEEMFGVRPISNGMIDQINPVQQFQEKLHIKGSFEIEEMSKNVDKQQKVSKDKKQIQGSCDDSLLNGIEGKIILGNSKSYACSICKSRRPNSRLQRKYTYEELQACTEGFSVKYSLCEGEYGPAFRGQLENNQEIVIKQHAFTNLQEQKVFMSEFQLLINARHENVIMLLGSCIRLSQLLIVYEKACNGSLDLYLSRESGRTLTWGERVKVAIGVARGLNYLHENNIAHGGIKPSNILLNHELKPLVGDFAFGKERCELKNLKRLKRMRNCGRTAPECCESGILSTKADVYSFGIVLVELITGRMISEKVSGERCPTECIRSLLEEQKFLQLVDPKVSSSYDEQELVSLVHVIENCLKKNPEERFTMDMVVSALPSIVDCSDIYAKEDFSPENSHVSEVTNSKVKEEPPNEEDLSIENSEEKGDNITYIGGNETEIRQECDINPTGCENSKETEEKESLSTKICWEGCSSYGGAREFYLEGIKEYTACEELFGFCDLI 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4940g00005 967 PANTHER OS01G0253100 PROTEIN 70 388 - -
Vium4940g00005 967 SUPERFAMILY Protein kinase-like (PK-like) 561 843 IPR011009 -
Vium4940g00005 967 Gene3D Phosphorylase Kinase; domain 1 82 192 - -
Vium4940g00005 967 Gene3D Phosphorylase Kinase; domain 1 545 653 - -
Vium4940g00005 967 MobiDBLite consensus disorder prediction 860 884 - -
Vium4940g00005 967 SUPERFAMILY Protein kinase-like (PK-like) 103 388 IPR011009 -
Vium4940g00005 967 Pfam Protein tyrosine and serine/threonine kinase 139 381 IPR001245 GO:0004672|GO:0006468
Vium4940g00005 967 Pfam Protein tyrosine and serine/threonine kinase 582 843 IPR001245 GO:0004672|GO:0006468
Vium4940g00005 967 ProSiteProfiles Protein kinase domain profile. 118 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4940g00005 967 ProSiteProfiles Protein kinase domain profile. 579 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4940g00005 967 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 194 394 - -
Vium4940g00005 967 Gene3D Transferase(Phosphotransferase) domain 1 194 403 - -
Vium4940g00005 967 Gene3D Transferase(Phosphotransferase) domain 1 656 866 - -
Vium4940g00005 967 FunFam Proline-rich receptor-like protein kinase PERK8 541 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4940g00005 Vium-Chr4940 51526 59469 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4940g00005 567 852 Trihelix Transcription Factor Family AT5G38560 35.354 1.99e-49 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vium4940g00005 PK_Tyr_Ser-Thr 1.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4940g00005 - - vum:124839636 1918.28