Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4940g00004 ATGGAGGGAGGGATGAAACTAGTGGTTAAGAAGCATGATGCCACTAACACTCAAGTAAGGGAGAAAGCGAAGTCAGAAATCCAAACCATCCTCAAAGCTAGACATAAAAATGTGATTATGCTCTTGGGCTCATCTACAGCAGAATCTTTCCTGTTTACTGTATATGAGTATGCTTGCAATGGTTCACTTGACAAGTATCTATCAAAAGAAAGCTCCAGACCATTGATCTGGAAAGAAAGGAAACGAGTGGTAATAGGCCTTGCCCGAGGCCTCAAGTATCTACATGACAATAACATTGTTCATTGCAATATAAAACCAAGCAATATTCTTCTAACACATGACTTCAATCCACTGATTGGAGATTACAACTTTGGGAGAGAACAAGAATTGAAGTCCTACAAAAATAAAAACAGAGAGGATTATGAATACGTAGCACCAGAATTCCAGGAGAAAGGGAAGTTATCATCAAAGGCAGATGTATACTCTTTTGGTGTAGTTATTTTAGAGTTGATCGCAGGGCGAAGGACTACAGATTTCACGTCAGAACATAAAAGCCTTGTTGAATGGGCAAAGCCTCTACTTAAAAAGAAGAATTACTCAGAATTGGTGGATCCCATAATCAGAAACTCATACGAAGAGGATCACCTTCGTTGGATGGTCCAAGTAATAACAGAATGTTTGGAAAAGAATCCTAAGAAAAGGTCATCAATGAATATGGTTGTTTCTGCATTACAAGGCATAGCAGACAGTGAACTCGACCACATGACAGACGATATTACTCCAGCTGTATCAGATTCGAGAAGTGTGCCAGAAATAAATGGTTCTCAAGGTAACAAATAA 840 0.3893 MEGGMKLVVKKHDATNTQVREKAKSEIQTILKARHKNVIMLLGSSTAESFLFTVYEYACNGSLDKYLSKESSRPLIWKERKRVVIGLARGLKYLHDNNIVHCNIKPSNILLTHDFNPLIGDYNFGREQELKSYKNKNREDYEYVAPEFQEKGKLSSKADVYSFGVVILELIAGRRTTDFTSEHKSLVEWAKPLLKKKNYSELVDPIIRNSYEEDHLRWMVQVITECLEKNPKKRSSMNMVVSALQGIADSELDHMTDDITPAVSDSRSVPEINGSQGNK 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4940g00004 279 Gene3D Transferase(Phosphotransferase) domain 1 62 266 - -
Vium4940g00004 279 MobiDBLite consensus disorder prediction 258 279 - -
Vium4940g00004 279 PIRSF ILK 3 258 - -
Vium4940g00004 279 MobiDBLite consensus disorder prediction 261 279 - -
Vium4940g00004 279 PANTHER OS01G0253100 PROTEIN 4 251 - -
Vium4940g00004 279 SUPERFAMILY Protein kinase-like (PK-like) 3 260 IPR011009 -
Vium4940g00004 279 Gene3D Phosphorylase Kinase; domain 1 1 61 - -
Vium4940g00004 279 Pfam Protein kinase domain 6 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4940g00004 279 ProSiteProfiles Protein kinase domain profile. 1 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4940g00004 Vium-Chr4940 48449 51184 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4940g00004 4 267 Trihelix Transcription Factor Family AT5G38560 34.643 5.20e-46 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vium4940g00004 Pkinase 6.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4940g00004 - - vum:124839637 559.681