Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4939g00013 ATGCTCTCACCAAATGCCATCTTCTGTGCCGGTTTCTATGCAGTTGGCCAAAACGCATATTCATTCGCTGTTTGGTACTCCCAAACCAACGGCGAAACCCAGGATGCAACCGTCGTATGGATGGCTAACCGTGACTACCCCGTTAACGGCAAGGGCTCGAAGCTTTCCCTTCTTCCCAACGGCAACCTCGCCTTAAGGGACGCCGACGAATCCCACGTTTGGTCAACAAACACCGTTTCACCGTTGTCTGTGCAACTGTTTCTCGACAACACTGGCAACCTCGTTCTGCTTGAAACGAAGGGTGGCGGTGTCGTATTGTGGCAGAGCTTTGATTTCCCTACGGACACGCTTTTGCCTCAACAAGTGTTCACGAGATACGCGAAGCTGGTCTCTTCTAGAAGCGAGAGCAACAAGTCCTCCGGTTTCTACTCCTTGTTCTTCGACAACGACAACGTTCTTCGTCTTCTTTACGATGGTCCTGAAGTTTCTGGCCTTTACTGGCCAAATCCATGGTTGGCCACTTTGGACGCTGGACGATCCACTTACAACAACAGTAGAGTTGCGGTGATGGACACACTTGGCAATTTCAGTTCTTCAGATGATTTCTCTTTTTTGACTTCCGATTATGGCACTCTGATCCAAAGAAGATTAGTGCTTGATCATGATGGAAACATTCGTGTTCATAGTCGCAGAAATGGAGGAGAGAAATGGTCTGTTACGTGGCAAGCCAAAGCAAAACCGTGTAGTATTCATGGTATTTGTGGCCCTAACAGTTTGTGCTCTTACCACCAAAATTCTAGTATGAAGTGCTCTTGCCTTCCCGGGTACAAGTGGAAGAATGATAACGATTGGTCTTTTGGATGTGAACCGAAATTCTCTACTCTTTGCAACAAAACACAGTCTCGGTTTTTGCATATAAGCCGCGTGGAGTTATATGGCTATGACTATGGGATTTTGACAAATTACACTCTCCATCAGTGTCAGCAGTTATGCCTTCAATTATGCGACTGTAAAGGCATTCAGTATACATATGTCTTTGGCAGTGGCACTTATACTTGTTACCCAAAGTTGCAGCTACGGAATGCGTATCAGATACCGTATTTCAACGCTGATTTGTACCTGAAACTTCCAGCAAATAGTTCATATTCTTTTGAAGGATCCACACATGAGCAGAGTCTTGATTGTTCTTCGAGTTTGAGCACGATGCAGCTTGAGAGAGCGTATGACATGATTCATGAGAGCAGATATGTTAAGTTCTTGCTTTGGTTTGTAGGAGGATTGGGGGCGTTCGAAGTTTTATGCATATTTGTGATTTGTTTTTTTCTGGTGAGAACAAGGGAGAGAAAATATTCTGGTGTGGATAGACGAGTCTATCATTTGGCCATGACTGGTTTCAGAAAGTTCAGTTATTCTGAACTGAAACAAGCCACGAAAGGGTTCCGTGAGGAGATAGGAAGGGGTGCAGGAGGGGTTGTATTCAAAGGTGTGTTGTTGGATCAACGAGTTGCAGCTGTGAAGAGACTGAAGGATGCGAATCAAGGAGAAGAAGATTTCCTGGCAGAAGTAAGCAGCATTGGAAGGCTTAACCATATGAACTTGATTGAGATGTGGGGGTATTGTGCTGAGGGAAAACACAGACTCTTGGTGTATGAGTACATGGAGCAAGGGTCTCTAGCAGAAAATATGGAGTCAGATGAACTGGACTGGACCAAAAGGTTTAACATAGCACTAGGTACGGCAAGAGGGTTGGCTTATGTTCACGAGGAGTGCTTGGAGTGGATTCTACACTGTGATGTAAAGCCCCAAAACATTCTTCTAGATTCTAACTATCATCCAAAGGTAGCGGATTTTGGGCTGTCAAAGCTGCGAAACAGAAATGATACTAGTAGTACATACTCTAGTTTTTCACGGATACGAGGAACAAGAGGTTACATGGCTCCTGAGTGGGTTTTGAACCAACGAATCACGTCCAAAGTTGACGTTTATAGCTATGGAATTGTTGTTCTGGAAATGGTGACCGGAAAGAGTGCAACAAAGGATGTTGATTACACTGATAATGAAGTGGAGAAAGAGCATCTCAGCATGGTGGCGTGGCTTAAAGATAAACAGAAAAATGGATGCAGTTGGGTTGGTGAAATATTGAAACCCAATGTAAAAGGAGTTTATGAGGAAGATAAGATCGAAGCTTTGGTGAGAGCGGCTCTGCAATGCGTTGAAGAAGAAAAGGAGAAGAGACCCACAATGAGTCAAGTAGTAGAAATGCTTCTCAAATGTAGACGCGAAGATGATAATCTGCATCATCTCTCATAA 2310 0.4429 MLSPNAIFCAGFYAVGQNAYSFAVWYSQTNGETQDATVVWMANRDYPVNGKGSKLSLLPNGNLALRDADESHVWSTNTVSPLSVQLFLDNTGNLVLLETKGGGVVLWQSFDFPTDTLLPQQVFTRYAKLVSSRSESNKSSGFYSLFFDNDNVLRLLYDGPEVSGLYWPNPWLATLDAGRSTYNNSRVAVMDTLGNFSSSDDFSFLTSDYGTLIQRRLVLDHDGNIRVHSRRNGGEKWSVTWQAKAKPCSIHGICGPNSLCSYHQNSSMKCSCLPGYKWKNDNDWSFGCEPKFSTLCNKTQSRFLHISRVELYGYDYGILTNYTLHQCQQLCLQLCDCKGIQYTYVFGSGTYTCYPKLQLRNAYQIPYFNADLYLKLPANSSYSFEGSTHEQSLDCSSSLSTMQLERAYDMIHESRYVKFLLWFVGGLGAFEVLCIFVICFFLVRTRERKYSGVDRRVYHLAMTGFRKFSYSELKQATKGFREEIGRGAGGVVFKGVLLDQRVAAVKRLKDANQGEEDFLAEVSSIGRLNHMNLIEMWGYCAEGKHRLLVYEYMEQGSLAENMESDELDWTKRFNIALGTARGLAYVHEECLEWILHCDVKPQNILLDSNYHPKVADFGLSKLRNRNDTSSTYSSFSRIRGTRGYMAPEWVLNQRITSKVDVYSYGIVVLEMVTGKSATKDVDYTDNEVEKEHLSMVAWLKDKQKNGCSWVGEILKPNVKGVYEEDKIEALVRAALQCVEEEKEKRPTMSQVVEMLLKCRREDDNLHHLS 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4939g00013 769 FunFam Serine/threonine-protein kinase 114 241 - -
Vium4939g00013 769 Pfam S-locus glycoprotein domain 199 279 IPR000858 GO:0048544
Vium4939g00013 769 PANTHER OS07G0415500 PROTEIN 2 757 - -
Vium4939g00013 769 ProSiteProfiles Bulb-type lectin domain profile. 1 109 IPR001480 -
Vium4939g00013 769 ProSiteProfiles Protein kinase domain profile. 478 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4939g00013 769 Pfam Protein kinase domain 482 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4939g00013 769 Gene3D Transferase(Phosphotransferase) domain 1 553 767 - -
Vium4939g00013 769 PIRSF SRK 1 767 IPR024171 GO:0004674
Vium4939g00013 769 Gene3D - 1 111 IPR036426 -
Vium4939g00013 769 Gene3D Phosphorylase Kinase; domain 1 443 552 - -
Vium4939g00013 769 ProSiteProfiles PAN/Apple domain profile. 296 377 IPR003609 -
Vium4939g00013 769 SMART blect_4 2 113 IPR001480 -
Vium4939g00013 769 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 553 763 - -
Vium4939g00013 769 CDD STKc_IRAK 484 757 - -
Vium4939g00013 769 SUPERFAMILY alpha-D-mannose-specific plant lectins 37 168 IPR036426 -
Vium4939g00013 769 Pfam D-mannose binding lectin 37 125 IPR001480 -
Vium4939g00013 769 ProSitePatterns Serine/Threonine protein kinases active-site signature. 594 606 IPR008271 GO:0004672|GO:0006468
Vium4939g00013 769 CDD B_lectin 2 113 IPR001480 -
Vium4939g00013 769 SUPERFAMILY Protein kinase-like (PK-like) 457 756 IPR011009 -
Vium4939g00013 769 SMART ntp_6 298 376 IPR003609 -
Vium4939g00013 769 FunFam S-receptor-like serine/threonine-protein kinase 447 552 - -
Vium4939g00013 769 SMART serkin_6 478 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4939g00013 769 ProSitePatterns Protein kinases ATP-binding region signature. 484 506 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4939g00013 Vium-Chr4939 159781 162093 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4939g00013 433 755 Receptor kinase-like Gene Family AT5G20050 38.177 9.29e-62 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium4939g00013 Pkinase 5.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4939g00013 - - gmx:100792388 1274.61