Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4939g00011 ATGTACTTTATGCTCCCAACAGCAATGGGTATCAAACCCTTTATCCTTCTCCTCTTCATCTCAACTTCATCTGCTGCAGCCACAGATACACTTCAAGAAGGTTCTTCACTTTCAGTAGAGAAACAAAGCGACATCCTCTTTTCATCCAATGGTGATTTTTCAGCTGGCTTCTTCCAAGTTGGTGAAAACGCCTTCTGCTTCTCCGTTTGCTTCACGCGCTCCGAACAACCCACCGTTGTGTGGATGGCCAACCGTGACGAACCTGTCAACGGCAAAGGCTCCTTCCTATCACTCTGGAAAAACGGCAACCTCGTTTTGACGGATGCCGGAGGAACCGTTATCTGGGAAACCGCCACTATCTCCTCCTCCCAACTTTATCTGAAGCTAAGAAACAACGGAAACCTCCTTCTCCTCAATTCCAAAGGCACCACCATTTGGCAAAGCTTCGCTTCCCCTACCGACACCCTTCTTCCAACGCAACCACTCACGGAACGAGGCGGTCTCGTTTCTTCGAGAAGTGCAACGAACCATTCATCGGGGTTCTACAAGCTTTACTTCGACAACGACAACGTTCTTCGCTTACTCTACAAAGGTCGCACGTTTTCCAGCGTGTACTGGCCACCATCGTGGAAGCTTGCAATTGACATAGGCAGATCCACCTACAATGTAACCAAAACTGCTTCTTTAGATTCTTTTGGACAATTCACTTCCTCTGACGGGTTTCAATTTCTCTCCACGGATTATCCCAAAAAAGTGTACAGGATACTCAAGTTGGATTCTGATGGTAATTTGCGTTTGTATAGCTTCAACGAGGAGCGTAAGACGTGGGAGGTGACGTGGCAAGTTATTCCAGAACCGTGCACCATTCATGGAATTTGTGGAGCGAACAGCATGTGCAATCATGATCCCGTTATTGGAAGGACTTGCTATTGCTTGAAAGGGTTTAAGGTTAAAGATCCCAATGACTGGACTCAGGGCTGTGAGCCTGAGTTTTCTCCTTCATCTTTTTCTTGCAACAGTCGCCAGTCATTTGGTTTTCTCCGTCTTCAAACCACGGAACTGTATGGCTACGACTGGAACGTGACACGCGTTTCGAGCTTAAAGGAATGTCTGAATATATGTCTGTCACTTTGCGATAAATGTGTAGCTGTTCAGTTAAAGTTTAACGAGTTTGCTAGCTATAATTGTTACCCGAAAACGATGGCATTCAATGGACGGGATATTCCTAGTTTCGATGGAGAGATTTATCTAAAGTTGCCGAATTCGATTCTGCGCTCGTCCACGAAGATTCTAAAGCATTCCCGGATGAATTGCCCCGTTGGTTTGTCTCAAAAGTTTAACAGGGTTTATCAGCCGCCAAAAAAGAACTCCACATTGAGTTTCTTGGTTTGGTTCGCTTGCGGGGTCGGAGTGTTTGAGTTTTCCACCATTTTCTTGGTGTGGTTCTTCTTGTTCAGAACAAGCAAGCACCCTCACAGGCTGGATCAACAACACCATCTTCTGTCTGCCACAGGGTTTCAGAGGTTCACCTACGCGGAGCTAAAAGCCGCGACAAAAGGGTTCAAAGAAGAGGTTGGGCGAGGAGCAGGTGGGGTTGTTTACAAAGGGACATTATATGATAACCGTGTTGCGGCTATTAAACGCTTAAACGAAGCTACTCAAGGGGAAGCTGAATTTTTGGCTGAAATAAGCACAATTGGCATGCTGAACCACATGAATTTGATTGACATGTGGGGGTATTGCGTTGAAGGGAAGCACAGGCTTTTGGTGTATGAGTACATGGAACATGGATCCTTAGCAGACAATCTCTTTGGCAACGGTCTTGATTGGAAGAAAAGGTTCAACGTTGCCGTGGGCACAGCCAAAGGTTTAGCTTACTTACACGAAGAGTGTTTGGAGTGGATTTTGCATTGCGACGTGAAGCCTCAAAACATTCTACTTGACTCAGAGTTCAAACCCAAGGTAGCAGATTTTGGGTTGTCAAAACTTTTAAACAGAGACGAGCGTGGAAACTCTAGTTTTTCACGAATAAGAGGGACTCGAGGGTACATGGCTCCGGAGTGGGTCTACAATCTGCGTATCACTTCTAAGGTGGATGTTTATAGCTATGGGATTGTGGTGTTGGAAATGGTGAGTGGAAGAAGCCCTGTGGCAATTCACAGTCTTGAGAACAGCAGGGACATGGACCACCATCGCCTGGTGACGTGGATAAGGGAGAAGATAAAACATGCACCCACTTGTGCCTTTTGGATGGAGGAGATCATTGATCCCAAGTTAGAAGGAAACTTCGACGTTTCAGAAGTAGAGGTTTTGGTTAAAGTGGCTTTACAGTGCGTCCAAGATGACATGAATGAAAGACCATCCATGAGCCAAGTTGCAGAAATGCTTCTGGCCAACGAAAATAAACTCATCTCTCCTTAG 2421 0.4589 MYFMLPTAMGIKPFILLLFISTSSAAATDTLQEGSSLSVEKQSDILFSSNGDFSAGFFQVGENAFCFSVCFTRSEQPTVVWMANRDEPVNGKGSFLSLWKNGNLVLTDAGGTVIWETATISSSQLYLKLRNNGNLLLLNSKGTTIWQSFASPTDTLLPTQPLTERGGLVSSRSATNHSSGFYKLYFDNDNVLRLLYKGRTFSSVYWPPSWKLAIDIGRSTYNVTKTASLDSFGQFTSSDGFQFLSTDYPKKVYRILKLDSDGNLRLYSFNEERKTWEVTWQVIPEPCTIHGICGANSMCNHDPVIGRTCYCLKGFKVKDPNDWTQGCEPEFSPSSFSCNSRQSFGFLRLQTTELYGYDWNVTRVSSLKECLNICLSLCDKCVAVQLKFNEFASYNCYPKTMAFNGRDIPSFDGEIYLKLPNSILRSSTKILKHSRMNCPVGLSQKFNRVYQPPKKNSTLSFLVWFACGVGVFEFSTIFLVWFFLFRTSKHPHRLDQQHHLLSATGFQRFTYAELKAATKGFKEEVGRGAGGVVYKGTLYDNRVAAIKRLNEATQGEAEFLAEISTIGMLNHMNLIDMWGYCVEGKHRLLVYEYMEHGSLADNLFGNGLDWKKRFNVAVGTAKGLAYLHEECLEWILHCDVKPQNILLDSEFKPKVADFGLSKLLNRDERGNSSFSRIRGTRGYMAPEWVYNLRITSKVDVYSYGIVVLEMVSGRSPVAIHSLENSRDMDHHRLVTWIREKIKHAPTCAFWMEEIIDPKLEGNFDVSEVEVLVKVALQCVQDDMNERPSMSQVAEMLLANENKLISP 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4939g00011 806 SMART serkin_6 519 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4939g00011 806 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 207 IPR036426 -
Vium4939g00011 806 ProSiteProfiles Protein kinase domain profile. 519 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4939g00011 806 PANTHER OS07G0415500 PROTEIN 14 797 - -
Vium4939g00011 806 ProSitePatterns Protein kinases ATP-binding region signature. 525 547 IPR017441 GO:0005524
Vium4939g00011 806 ProSiteProfiles PAN/Apple domain profile. 338 420 IPR003609 -
Vium4939g00011 806 ProSiteProfiles Bulb-type lectin domain profile. 22 150 IPR001480 -
Vium4939g00011 806 PIRSF SRK 1 806 IPR024171 GO:0004674
Vium4939g00011 806 CDD PAN_AP_plant 337 420 - -
Vium4939g00011 806 FunFam S-receptor-like serine/threonine-protein kinase 488 593 - -
Vium4939g00011 806 Pfam D-mannose binding lectin 78 162 IPR001480 -
Vium4939g00011 806 Pfam Protein kinase domain 522 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4939g00011 806 Pfam S-locus glycoprotein domain 249 318 IPR000858 GO:0048544
Vium4939g00011 806 Gene3D Transferase(Phosphotransferase) domain 1 594 804 - -
Vium4939g00011 806 Gene3D - 22 151 IPR036426 -
Vium4939g00011 806 FunFam Serine/threonine-protein kinase 594 803 - -
Vium4939g00011 806 CDD STKc_IRAK 525 796 - -
Vium4939g00011 806 Gene3D Phosphorylase Kinase; domain 1 485 593 - -
Vium4939g00011 806 SUPERFAMILY Protein kinase-like (PK-like) 495 796 IPR011009 -
Vium4939g00011 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Vium4939g00011 806 SMART blect_4 37 152 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4939g00011 Vium-Chr4939 141821 144432 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4939g00011 452 796 Receptor kinase-like Gene Family AT1G56120 40.282 4.06e-66 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium4939g00011 Pkinase 2.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4939g00011 - - gmx:100816469 1287.71