Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4939g00008 ATGGCTAATCACCACCACCATCATCATGCGCACGACACCAACCTCAAATCCCTTCTCGACACCCTATACTGCTCCGAAGAGCATTGGGAGGAAAACGTCGGGGAAGATGAATTAGACCAGGCAGAGGATGATTACCCTACAGCTAACGATATTACTAATAATAACGCTACCAGTAGCACCACCCTAATTAACTCCCTTCACTCCCCTCATGCGTTGTTCGAAAGCGACATGTTTTGTGACGAACAGGAGTTGACATCGCTGCTGGGGAAAGAAAAACACAACCCTCTAACCACTTTCCTCCGAAGCAACCCTGCGCTCGAGTGTGCTCACAGGGAAGGCGTGGAATGGATGCTCAGAGTGAACGCTCACTACTCCTTCTCTGCTCTCACAGCTCTTCTTGCCGTCAACTACTTTGACCGCTTCCTCTCCACCTTCCGCTTTCAGGATGGCAAGCCGTGGATGACACATCTCGCTGCCGTCGCTTGCCTCTCCCTCGCTGCCAAAGTGGAGGAGACACAAGTTCCCCTTCTCCTAGACCTTCAGGTGGAAGAGGGTAGATACTTGTTCGAAGCCAAAACGATTAAAAGGATGGAAATTTTGGTCCTTTCCACTCTTGGATGGAAGATGAACCCGCCTACCCCTCTCTCCTTTCTTGATTACATCACAAGAAGACTTGGATTGAAGGATAATCACTGCTGGGACTTCCTTAGGAAGTGCGAAGGCGTTCTTGTCTCTGTCCTCGGAGATTGGAGATTAATGGGCTATCTACCGTCTGAACTGGCAAGTGCGACGATGATACACGTAGTGAAAAGCGTGGAGCCTTGTCTAGAAGGCGAATACCAGAGACAACTCTTGGGTATTCTAAGATTCGACAAGGAGAAGGTGAATGAGTGTGGGAAAGTGTTGGAATTGTGGTCAGGATACGAGAAGCAGGGGAGACAATGCATGAAAAGGAAATTTGGAAGCGTTCCGGGAAGTCCAAACGGCGTGATGGAGATGTCGTTTAGCTGTGATAGCTCGAACGAGGAGGTGTGGAGAGTAGTTGCCGGTGGTTCGGTGTGTTGTTCGCCGAAGAAGAGTAGAAGTGAAGTAAAGCGATAA 1101 0.4941 MANHHHHHHAHDTNLKSLLDTLYCSEEHWEENVGEDELDQAEDDYPTANDITNNNATSSTTLINSLHSPHALFESDMFCDEQELTSLLGKEKHNPLTTFLRSNPALECAHREGVEWMLRVNAHYSFSALTALLAVNYFDRFLSTFRFQDGKPWMTHLAAVACLSLAAKVEETQVPLLLDLQVEEGRYLFEAKTIKRMEILVLSTLGWKMNPPTPLSFLDYITRRLGLKDNHCWDFLRKCEGVLVSVLGDWRLMGYLPSELASATMIHVVKSVEPCLEGEYQRQLLGILRFDKEKVNECGKVLELWSGYEKQGRQCMKRKFGSVPGSPNGVMEMSFSCDSSNEEVWRVVAGGSVCCSPKKSRSEVKR 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4939g00008 366 Gene3D - 111 210 - -
Vium4939g00008 366 Gene3D - 211 299 - -
Vium4939g00008 366 SUPERFAMILY Cyclin-like 84 210 IPR036915 -
Vium4939g00008 366 SMART cyclin_7 115 203 IPR013763 -
Vium4939g00008 366 FunFam CYCLIN D32 211 300 - -
Vium4939g00008 366 CDD CYCLIN_AtCycD-like_rpt2 213 302 - -
Vium4939g00008 366 FunFam D6-type cyclin 93 210 - -
Vium4939g00008 366 SMART Cyclin_C_2 212 339 IPR004367 -
Vium4939g00008 366 CDD CYCLIN_AtCycD-like_rpt1 111 207 - -
Vium4939g00008 366 Pfam Cyclin, N-terminal domain 93 210 IPR006671 -
Vium4939g00008 366 Pfam Cyclin, C-terminal domain 212 321 IPR004367 -
Vium4939g00008 366 PANTHER CYCLINS 85 303 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4939g00008 Vium-Chr4939 86862 88886 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4939g00008 1 319 Core Cell Cycle Gene Families AT4G34160 44.892 1.55e-86 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4939g00008 K14505 - gmx:100811122 451.44