Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4939g00003 ATGTGGTCAGACATCTGCATCCTCTTCTTGTCACCTGTTCTCTCTCTTGTAAAACGCAAAAACTCCATTCCTAGTAGCCAAGCGGAGCGTATCGAATGGACAAATCCCCAATTGCTTTATCAACACACCAAAAACTTCATTCAGTCTTCGCCACCCTGTTCTGAGGTTGCTCCGACAATGCCGAACACAAACCATCCATTCCCATTACTGGTACTGCTTCTGCTCCTGCCACTGCACGCTTCTTGCTACGCACATTCCTCCCAACTCCATCGTCATATTCCGCCGTTAGTTTTCACGGACGCCCACGCCCTCCTCGCCTTCAAACTTAAAGCCGACGTAAACGACCACCTTGACTTCTCCCCCCTCACGCGCGGCCTCCGCTTCTGCACGTGGCAGGGCGTCATATGCAACGGCCCCAAAGTAGAGCGTCTCATTCTCCAGGGCTTAGATCTCGGCGGCGTTTGGGCTCCAAACACACTCACGCGTCTCGACCAGCTCCGAGTTCTCAGTTTACAGAACAACTCACTCACGGGAACCATCCCGGACCTCAGCGCTCTCTCCAATCTCAAAAGCCTCTTCCTCGACAACAACCGATTCACCGGTTCTCTCCCTCCTTCACTCTTCTCTCTCCACCGTTTACGAAACTTGGATTTCTCTCACAACAATCTCTCTGGACCTATCTCTGCTGCCTTCACTAACCTAGATCGTCTTCACACACTCCGTCTTAGTTATAACGCTTTTAGCGGTTCAGTCCCTCCGTTTAACCAGTCCTCTCTCAGAATACTTGAAATCTCCCGCAACAACCTCTCCGGCGCGATTCCGGTGACGCCGACGCTGTTTCGTTTTCCGCCGTCTTCCTTTGCGTTCAACCCTAACCTCTGCGGTGAAATCATCCGCGTGCAATGCCGTCCTGCGCAGCCTTTCTTCGGGTCCGCTGGGCCACCTAAGGCGCCACTCGGTCAGAGCGCGCAGGTGCACGGCGTCAGTGGCTTAATCAGACAGCCGTACGCGAAGAAGCGGCGCGACCGACGGGCTGTGATAATCGGATTCTCCGCCGGCGTGTTCGTTCTAGTTTGCTCGCTGGTGTGCTTCGCGGCGGCGGTGAGGAAGCAGAGGAGCCGGTGCAATAAGGACCGGCCGTGCGGGATGATGGCGGCGGATGCGGCAGCGACGGCGGAGGCCGCGGCAGTGATGCGGATGGAGATGGAGAGAGAGTTGGAAGAGAAGGTGAAGAGAGCGGAGGTGGCGAAGAGTGGGAGTTTGGTATTCTGTGCGGGTGAGGCGCAGGTGTATACGCTGGACCAGTTGATGAAGGGTTCCGCGGAGCTTTTAGGGAGAGGGTGTTTGGGAACCACGTACAAGGCAGCTCTTGATAACCGTCTGATGGTGACGGTGAAGCGCCTTGATGCGGGGAAAATGGCTGCCCATGCAACGAAGGAAGTGTTCGAGCGACACATGGAATCCGTGGGTGGGCTTCGACACTCCAATTTGGTTCCTCTTAGGGCGTATTTCCAGGCCAAGCAAGAGAGGCTCATTATCTATGACTTTCAGCCCAATGGCAGTCTCTTCTCCCTCATACACGGATCGAGATCAAGCAGGGCAAGGCCATTACACTGGACATCATGCTTAAAAATAGCAGAGGACGTAGCACAAGGTCTGGCCTTCATCCACCAGGCATGGAGACTAGTCCATGGCAATCTGAAGTCCACGAATGTTCTTCTTGGACCTGATTTCGAGGCATGCATCACAGATTACTGCCTCTCCGTGTTGACACACCCATCCACATTTGATGAAGACGGCGATTCAGCAGCGTACAGAGCTCCAGAAACTCGCAACCCCAATCATCAGCCAACCCACAAATCCGATGTTTATGCCTACGGGATTTTGTTGCTTGAGCTTCTGACTGGGAAATTTCCCTCCGAGCTTCCATTTATGGTTCCTGGTGACATGTCAAGTTGGGTGAGGTCCATAAGGGATGACAATGGGGGCGAAGATAGCCGAATGGACATGCTTCTTCAGGTGGCTACAACTTGTAGCTTGACCTCACCGGAGCAGAGGCCAACTATGTGGCAGGTCTTGAAGATGTTGCAGGAAATCAAAGAAATTGTACTATTGGAGGATACCAGTGAATTGGAACTGCGCAGTGGTGATGACATGCCTTAG 2163 0.5354 MWSDICILFLSPVLSLVKRKNSIPSSQAERIEWTNPQLLYQHTKNFIQSSPPCSEVAPTMPNTNHPFPLLVLLLLLPLHASCYAHSSQLHRHIPPLVFTDAHALLAFKLKADVNDHLDFSPLTRGLRFCTWQGVICNGPKVERLILQGLDLGGVWAPNTLTRLDQLRVLSLQNNSLTGTIPDLSALSNLKSLFLDNNRFTGSLPPSLFSLHRLRNLDFSHNNLSGPISAAFTNLDRLHTLRLSYNAFSGSVPPFNQSSLRILEISRNNLSGAIPVTPTLFRFPPSSFAFNPNLCGEIIRVQCRPAQPFFGSAGPPKAPLGQSAQVHGVSGLIRQPYAKKRRDRRAVIIGFSAGVFVLVCSLVCFAAAVRKQRSRCNKDRPCGMMAADAAATAEAAAVMRMEMERELEEKVKRAEVAKSGSLVFCAGEAQVYTLDQLMKGSAELLGRGCLGTTYKAALDNRLMVTVKRLDAGKMAAHATKEVFERHMESVGGLRHSNLVPLRAYFQAKQERLIIYDFQPNGSLFSLIHGSRSSRARPLHWTSCLKIAEDVAQGLAFIHQAWRLVHGNLKSTNVLLGPDFEACITDYCLSVLTHPSTFDEDGDSAAYRAPETRNPNHQPTHKSDVYAYGILLLELLTGKFPSELPFMVPGDMSSWVRSIRDDNGGEDSRMDMLLQVATTCSLTSPEQRPTMWQVLKMLQEIKEIVLLEDTSELELRSGDDMP 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4939g00003 720 Pfam Leucine rich repeat 187 246 IPR001611 GO:0005515
Vium4939g00003 720 SUPERFAMILY L domain-like 99 276 - -
Vium4939g00003 720 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 73 700 IPR046959 -
Vium4939g00003 720 Gene3D Phosphorylase Kinase; domain 1 403 516 - -
Vium4939g00003 720 Gene3D Ribonuclease Inhibitor 99 208 IPR032675 -
Vium4939g00003 720 SUPERFAMILY Protein kinase-like (PK-like) 442 697 IPR011009 -
Vium4939g00003 720 Pfam Protein tyrosine and serine/threonine kinase 442 696 IPR001245 GO:0004672|GO:0006468
Vium4939g00003 720 Gene3D Ribonuclease Inhibitor 209 295 IPR032675 -
Vium4939g00003 720 ProSiteProfiles Leucine-rich repeat profile. 165 187 IPR001611 GO:0005515
Vium4939g00003 720 FunFam Nuclear pore complex protein NUP107 97 253 - -
Vium4939g00003 720 Gene3D Transferase(Phosphotransferase) domain 1 518 711 - -
Vium4939g00003 720 ProSiteProfiles Protein kinase domain profile. 438 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4939g00003 Vium-Chr4939 28556 32314 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4939g00003 100 707 Receptor kinase-like Gene Family AT5G43020 56.847 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium4939g00003 PK_Tyr_Ser-Thr 3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4939g00003 - - var:108341030 1404.04