Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4939g00002 ATGGAAGCAGGGGAAGATTGCTGCGTTAAGGTCGCGGTCCATGTTCGGCCACTCATCGCCGATGAGAAGCTTCAAGGATGCAAAGATTGCGTCACCGTCGTTTCTGGGAAGCCGCAGGTACAAATTGGTGCTCACTCCTTTACATTTGATCACGTTTATGGAAGCACTGGTTCTCCCTCAAGTGCCATGTTTGAAGAATGTGTTGCTCCCCTTGTTGATGGTTTGTTTCAAGGATATAACGCTACTGTTCTCGCTTATGGTCAGACAGGTTCTGGGAAAACGTACACCATGGGAACTGGCTTTAAAGATGGTTGCCAAACAGGAATAATACCTCAAGTTATGAACGTTTTGTTTAGCAAAATTGGGACCCTAAAGCACCAGATTGATTTTCAGTTGCATGTGTCTTTTATTGAGATTCTTAAAGAAGAAGTAAGAGACTTGTTGGACCCCTCGTCCATGAACAAACCAGAAACTGCAAATGGACATTCAGGAAAAATTACCTCTCCTGGGAAGCCACCAATACAAATTCGTGAGACATCAAATGGTGTCATCACCCTTGCAGGATCCACTGAAGTCAGTGTTACAACACTAAAGGAAATGGCTGCTTGCCTGGAACAGGGATCATTGAGCAGGGCAACTGGGAGCACAAATATGAACAACCAATCCAGTCGATCTCATGCCATCTTCACCATCACCCTAGAACAAATGCGAAAGCTGAATAGTCCTGGTGAGAGTGGTTTAAATGATACCATGAATGAAGAGTATCTTTGTGCCAAGTTACACTTAGTAGATCTTGCTGGATCAGAACGAGCTAAAAGAACAGGGTCTGATGGTCTGCGTTTTAAGGAAGGAGTTCACATTAACAAAGGCCTTCTAGCCCTTGGCAATGTTATTAGTGCACTTGGTGATGAAAAGAAGCGAAAGGAAGGTGTTCATGTTCCTTATAGGGATAGTAAGCTTACTAGGCTTTTGCAGGATTCACTAGGAGGTAACAGCAGAACTGTCATGATTGCTTGTATAAGTCCTGCTGATATTAATGCTGAGGAAACCCTTAACACTTTGAAGTACGCAAATCGTGCACGCAATATCCAAAATAAGCCTGTTATCAATAGAGACCCCATGTCCAATGAGATGCTAAAAATGCGACAACAGCTAGAGTATTTGCAGGCAGAACTTTGTGCTCGAGCTGGTGGCTCTTCTGAGGAAGTTCAGGTCCTTAAGGAAAGAATTGCTTGGCTTGAAGCTGCTAATGAAGATCTTTGCCGTGAACTTCATGAATACCGTAGTAGATGTTCTATTGCAGAACCAGGTGAAAGGGAAGCTTATGATGGTAACACATACATTGTGAAGACTGATGCAATTAAGAGGAGCTTACCTATCATAGAAGCTGAGTATCCAATGAGTGAAACAGTGGGTGATTCTAGGGAAATAGAAGAAGTAGCAAAAGAGTGGGAGCACACACTTCTGCAGAATAGTATGGATAGAGAGTTACATGAATTGAATAAACGCTTGCAACAGAAAGAGTCCGAGATGAAGCTTTTTGGAATATCTGATGCCGAAGTACTCAAGCAGCATTTTGGTAGAAAGATAACGGAATTGGAAGATGAGAAGAGAGTAGTGCAGCGAGAGAGAGATTGTCTTTTGGCAGAAGTTGAAAATCTCGCTGCCAATTCTGATGGACAAACACAGAAATTAGAGGATATTCACGCCCAAAAATTGAAAGCACTTGAAGCACAGATTATGGATCTGAAGAAGAAGCAAGAGAGTCAGGTCCAGCTTCTGAAGCAAAAGCAAAAAAGTGATGAAGCAGCAAAGAGACTGCAAGATGAAATACAGTGTATAAAGGCTCAAAAGGTTCAATTGCAGCAAAGGATAAAACAAGAATCAGAACAGTTTCGGCAGTGGAAGGCTTCAAGAGAGAAAGAGTTATTGCAATTAAAGAAGGAGGGAAGAAGAAATGAGTATGAAAGACACAAGCTGCAAGCTTTAAATCAGCGGCAGAAATTGGTTCTTCAGAGAAAAACTGAAGAAGCTGCGATGGCTACCAAGAGGTTAAAGGAGTTGTTAGAAGCACGTAAAACTTCAGGCCGAGAGACTTCAGTTACAACGAATGGAAGTGGAACAAATGGTCAGAGCAATGAGAAGTCTTTACAACGGTGGCTTGATCATGAGCTAGAAGTTATGGTAAAGGAGCACGAAGTCCGTTTTGAGTATGAGAAACAGAGCCAAGTGCGAGCTGCCCTTGCAGATGAATTAGCCATGCTGAAGCAAGTAAATGAGTTTGCTGCAAAGGGTCTCAGTCCTCCAAGAAAGAATGGATTTGCCAGGGCATCCTCCATGTCACCAAATGCAAGAATGGCCAGAATAGCTTCCCTTGAGAACATGCTGAGTATATTATCTAATTCACTTGTTGCAATGGCTTCTCAACTTTCTGAGGCAGAAGAACGAGAAAGAGCCTTCTCTAATCGTGGACGCTGGAATCAATTGCGTTCAATGGGAGAAGCGAAGAATTTGCTTCAATATATGTTTAATTCTGTTGCAGATGCTAGGTGCCAACTCTGGGAGAAGGACATGGAGATCAGGGAAATGAAAGATCAAATAAAAGAACTCGTTGGTCTCTTACGGCAAAGTGAGATGAAGAGAAAAGAAATTGAGAAGGAACTAAAAGTGAGAGAACAAGCTAATGGAAGCACACTGGCTACACCACCTTCGGGTGACTCCCCTAATCCATTGAAACAACAAGCTGAAGACATGAAAGGGCCTTTATCTCCAATGTCTATGCCAGTGCCTAAACAGCTAAAATACACGCCAGGGGTTGCCAATGGGTTGGTGAGGGAATCGGCAGCATTTGTAGATCAGGGTAGAAAGATGATACCCATCGGACACCTGTCAATGAAAAAACTAGCAATGGTAGGACAAGCTTCTGGAAAGTTATGGAGGTGGAAAAGAAGTCATCACCAGTGGCTGCTACAATTCAAGTGGAAATGGCAGAAACCATGGAGACTTTCAGAATGGATACGACATAGTGATGAGACGATCATGAGAACAAAACCACGCTCACAGGCTTTGCCACGTATCAGGTGA 3084 0.43 MEAGEDCCVKVAVHVRPLIADEKLQGCKDCVTVVSGKPQVQIGAHSFTFDHVYGSTGSPSSAMFEECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGCQTGIIPQVMNVLFSKIGTLKHQIDFQLHVSFIEILKEEVRDLLDPSSMNKPETANGHSGKITSPGKPPIQIRETSNGVITLAGSTEVSVTTLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLNSPGESGLNDTMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINKGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPVINRDPMSNEMLKMRQQLEYLQAELCARAGGSSEEVQVLKERIAWLEAANEDLCRELHEYRSRCSIAEPGEREAYDGNTYIVKTDAIKRSLPIIEAEYPMSETVGDSREIEEVAKEWEHTLLQNSMDRELHELNKRLQQKESEMKLFGISDAEVLKQHFGRKITELEDEKRVVQRERDCLLAEVENLAANSDGQTQKLEDIHAQKLKALEAQIMDLKKKQESQVQLLKQKQKSDEAAKRLQDEIQCIKAQKVQLQQRIKQESEQFRQWKASREKELLQLKKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLEARKTSGRETSVTTNGSGTNGQSNEKSLQRWLDHELEVMVKEHEVRFEYEKQSQVRAALADELAMLKQVNEFAAKGLSPPRKNGFARASSMSPNARMARIASLENMLSILSNSLVAMASQLSEAEERERAFSNRGRWNQLRSMGEAKNLLQYMFNSVADARCQLWEKDMEIREMKDQIKELVGLLRQSEMKRKEIEKELKVREQANGSTLATPPSGDSPNPLKQQAEDMKGPLSPMSMPVPKQLKYTPGVANGLVRESAAFVDQGRKMIPIGHLSMKKLAMVGQASGKLWRWKRSHHQWLLQFKWKWQKPWRLSEWIRHSDETIMRTKPRSQALPRIR 1027
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium4939g00002 1027 Coils Coil 860 894 - -
Vium4939g00002 1027 SMART kinesin_4 6 371 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4939g00002 1027 MobiDBLite consensus disorder prediction 695 715 - -
Vium4939g00002 1027 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 393 IPR027417 -
Vium4939g00002 1027 ProSitePatterns Kinesin motor domain signature. 258 269 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vium4939g00002 1027 Coils Coil 403 423 - -
Vium4939g00002 1027 PRINTS Kinesin heavy chain signature 313 334 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4939g00002 1027 PRINTS Kinesin heavy chain signature 78 99 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4939g00002 1027 PRINTS Kinesin heavy chain signature 216 233 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4939g00002 1027 PRINTS Kinesin heavy chain signature 259 277 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4939g00002 1027 MobiDBLite consensus disorder prediction 894 911 - -
Vium4939g00002 1027 Coils Coil 490 510 - -
Vium4939g00002 1027 MobiDBLite consensus disorder prediction 150 174 - -
Vium4939g00002 1027 MobiDBLite consensus disorder prediction 691 715 - -
Vium4939g00002 1027 FunFam kinesin-like protein KIN-4A isoform X1 2 391 - -
Vium4939g00002 1027 Coils Coil 566 638 - -
Vium4939g00002 1027 ProSiteProfiles Kinesin motor domain profile. 8 363 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4939g00002 1027 MobiDBLite consensus disorder prediction 890 925 - -
Vium4939g00002 1027 CDD KISc_KIF4 7 364 - -
Vium4939g00002 1027 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 1 1020 IPR027640 GO:0003777|GO:0007018
Vium4939g00002 1027 Coils Coil 523 557 - -
Vium4939g00002 1027 Coils Coil 671 691 - -
Vium4939g00002 1027 Gene3D Kinesin motor domain 2 391 IPR036961 -
Vium4939g00002 1027 Pfam Kinesin motor domain 15 363 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium4939g00002 Vium-Chr4939 15185 26600 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4939g00002 9 387 Calmodulin-binding Proteins AT5G65930 33.420 2.56e-53 201
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4939g00002 - - gmx:100802585 1926.75