Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4939g00001 ATGGAAGCAGGGGAAGATTGCTGCGTTAAGGTCGCGGTCCATGTTCGGCCACTCATCGCCGATGAGAAGCTTCAAGGATGCAAAGATTGCGTCACCGTCGTTTCTGGGAAGCCGCAGGTACAAATTGGTGCTCACTCCTTTACATTTGATCACGTTTATGGAAGCACTGGTTCTCCCTCAAGTGCCATGTTTGAAGAATGTGTTGCTCCCCTTGTTGATGGTTTGTTTCAAGGATATAACGCTACTGTTCTCGCTTATGGTCAGACAGGTTCTGGGAAAACGTACACCATGGGAACTGGCTTTAAAGATGGTTGCCAAACAGGAATAATACCTCAAGTTATGAACGTTTTGTTTAGCAAAATTGGGACCCTAAAGCACCAGATTGATTTTCAGTTGCATGTGTCTTTTATTGAGATTCTTAAAGAAGAAGTAAGAGACTTGTTGGACCCCTCGTCCATGAACAAACCAGAAACTGCAAATGGACATTCAGGAAAAATTACCTCTCCTGGGAAGCCACCAATACAAATTCGTGAGACATCAAATGGTGTCATCACCCTTGCAGGATCCACTGAAGTCAGTGTTACAACACTAAAGGAAATGGCTGCTTGCCTGGAACAGGGATCATTGAGCAGGGCAACTGGGAGCACAAATATGAACAACCAATCCAGTCGATCTCATGCCATCTTCACCATCACCCTAGAACAAATGCGAAAGCTGAATAGTCCTGGTGAGAGTGGTTTAAATGATACCATGAATGAAGAGTATCTTTGTGCCAAGTTACACTTAGTAGATCTTGCTGGATCAGAACGAGCTAAAAGAACAGGGTCTGATGGTCTGCGTTTTAAGGAAGGAGTTCACATTAACAAAGGCCTTCTAGCCCTTGGCAATGTTATTAGTGCACTTGGTGATGAAAAGAAGCGAAAGGAAGGTGTTCATGTTCCTTATAGGGATAGTAAGCTTACTAGGCTTTTGCAGGATTCACTAGGAGGTAACAGCAGAACTGTCATGATTGCTTGTATAAGTCCTGCTGATATTAATGCTGAGGAAACCCTTAACACTTTGAAGTACGCAAATCGTGCACGCAATATCCAAAATAAGCCTGTTATCAATAGAGACCCCATGTCCAATGAGATGCTAAAAATGCGACAACAGCTAGAGTATTTGCAGGCAGAACTTTGTGCTCGAGCTGGTGGCTCTTCTGAGGAAGTTCAGGTCCTTAAGGAAAGAATTGCTTGGCTTGAAGCTGCTAATGAAGATCTTTGCCGTGAACTTCATGAATACCGTAGTAGATGTTCTATTGCAGAACCAGGTGAAAGGGAAGCTTATGATGGTAACACATACATTGTGAAGACTGATGCAATTAAGAGGAGCTTACCTATCATAGAAGCTGAGTATCCAATGAGTGAAACAGTGGCAGGTGATTCTAGGGAAATAGAAGAAGTAGCAAAAGAGTGGGAGCACACACTTCTGCAGAATAGTATGGATAGAGAGTTACATGAATTGAATAAACGCTTGCAACAGAAAGAGTCCGAGATGAAGCTTTTTGGAATATCTGATGCCGAAGTACTCAAGCAGCATTTTGGTAGAAAGATAACGGAATTGGAAGATGAGAAGAGAGTAGTGCAGCGAGAGAGAGATTGTCTTTTGGCAGAAGTTGAAAATCTCGCTGCCAATTCTGATGGACAAACACAGAAATTAGAGGATATTCACGCCCAAAAATTGAAAGCACTTGAAGCACAGATTATGGATCTGAAGAAGAAGCAAGAGAGTCAGGTCCAGCTTCTGAAGCAAAAGCAAAAAAGTGATGAAGCAGCAAAGAGACTGCAAGATGAAATACAGTGTATAAAGGCTCAAAAGGTTCAATTGCAGCAAAGGATAAAACAAGAATCAGAACAGTTTCGGCAGTGGAAGGCTTCAAGAGAGAAAGAGTTATTGCAATTAAAGAAGGAGGGAAGAAGAAATGAGTATGAAAGACACAAGCTGCAAGCTTTAAATCAGCGGCAGAAATTGGTTCTTCAGAGAAAAACTGAAGAAGCTGCGATGGCTACCAAGAGGTTAAAGGAGTTGTTAGAAGCACGTAAAACTTCAGGCCGAGAGACTTCAGTTACAACGAATGGAAGTGGAACAAATGGTCAGAGCAATGAGAAGTCTTTACAACGGTGGCTTGATCATGAGCTAGAAGTTATGGTAAAGGAGCACGAAGTCCGTTTTGAGTATGAGAAACAGAGCCAAGTGCGAGCTGCCCTTGCAGATGAATTAGCCATGCTGAAGCAAGTAAATGAGTTTGCTGCAAAGGGTCTCAGTCCTCCAAGAAAGAATGGATTTGCCAGGGCATCCTCCATGTCACCAAATGCAAGAATGGCCAGAATAGCTTCCCTTGAGAACATGCTGAGTATATTATCTAATTCACTTGTTGCAATGGCTTCTCAACTTTCTGAGGCAGAAGAACGAGAAAGAGCCTTCTCTAATCGTGGACGCTGGAATCAATTGCGTTCAATGGGAGAAGCGAAGAATTTGCTTCAATATATGTTTAATTCTGTTGCAGATGCTAGGTGCCAACTCTGGGAGAAGGACATGGAGATCAGGGAAATGAAAGATCAAATAAAAGAACTCGTTGGTCTCTTACGGCAAAGTGAGATGAAGAGAAAAGAAATTGAGAAGGAACTAAAAGTGAGAGAACAAGCTAATGGAAGCACACTGGCTACACCACCTTCGGGTGACTCCCCTAATCCATTGAAACAACAAGCTGAAGACATGAAAGGGCCTTTATCTCCAATGTCTATGCCAGTGCCTAAACAGCTAAAATACACGCCAGGGGTTGCCAATGGGTTGGTGAGGGAATCGGCAGCATTTGTAGATCAGGGTAGAAAGATGATACCCATCGGACACCTGTCAATGAAAAAACTAGCAATGGTAGGACAAGCTTCTGGAAAGTTATGGAGGTGGAAAAGAAGTCATCACCAGTGGCTGCTACAATTCAAGTGGAAATGGCAGAAACCATGGAGACTTTCAGAATGGATACGACATAGTGATGAGACGATCATGAGAACAAAACCACGCTCACAGGCTTTGCCACGTATCAGGTGA 3087 0.4302 MEAGEDCCVKVAVHVRPLIADEKLQGCKDCVTVVSGKPQVQIGAHSFTFDHVYGSTGSPSSAMFEECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFKDGCQTGIIPQVMNVLFSKIGTLKHQIDFQLHVSFIEILKEEVRDLLDPSSMNKPETANGHSGKITSPGKPPIQIRETSNGVITLAGSTEVSVTTLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLNSPGESGLNDTMNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINKGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPVINRDPMSNEMLKMRQQLEYLQAELCARAGGSSEEVQVLKERIAWLEAANEDLCRELHEYRSRCSIAEPGEREAYDGNTYIVKTDAIKRSLPIIEAEYPMSETVAGDSREIEEVAKEWEHTLLQNSMDRELHELNKRLQQKESEMKLFGISDAEVLKQHFGRKITELEDEKRVVQRERDCLLAEVENLAANSDGQTQKLEDIHAQKLKALEAQIMDLKKKQESQVQLLKQKQKSDEAAKRLQDEIQCIKAQKVQLQQRIKQESEQFRQWKASREKELLQLKKEGRRNEYERHKLQALNQRQKLVLQRKTEEAAMATKRLKELLEARKTSGRETSVTTNGSGTNGQSNEKSLQRWLDHELEVMVKEHEVRFEYEKQSQVRAALADELAMLKQVNEFAAKGLSPPRKNGFARASSMSPNARMARIASLENMLSILSNSLVAMASQLSEAEERERAFSNRGRWNQLRSMGEAKNLLQYMFNSVADARCQLWEKDMEIREMKDQIKELVGLLRQSEMKRKEIEKELKVREQANGSTLATPPSGDSPNPLKQQAEDMKGPLSPMSMPVPKQLKYTPGVANGLVRESAAFVDQGRKMIPIGHLSMKKLAMVGQASGKLWRWKRSHHQWLLQFKWKWQKPWRLSEWIRHSDETIMRTKPRSQALPRIR 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4939g00001 1028 MobiDBLite consensus disorder prediction 895 912 - -
Vium4939g00001 1028 Coils Coil 672 692 - -
Vium4939g00001 1028 Coils Coil 491 511 - -
Vium4939g00001 1028 SMART kinesin_4 6 371 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4939g00001 1028 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 393 IPR027417 -
Vium4939g00001 1028 ProSitePatterns Kinesin motor domain signature. 258 269 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vium4939g00001 1028 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 1 1021 IPR027640 GO:0003777|GO:0007018
Vium4939g00001 1028 Coils Coil 403 423 - -
Vium4939g00001 1028 MobiDBLite consensus disorder prediction 891 926 - -
Vium4939g00001 1028 MobiDBLite consensus disorder prediction 696 716 - -
Vium4939g00001 1028 Coils Coil 524 558 - -
Vium4939g00001 1028 MobiDBLite consensus disorder prediction 150 174 - -
Vium4939g00001 1028 FunFam kinesin-like protein KIN-4A isoform X1 2 391 - -
Vium4939g00001 1028 PRINTS Kinesin heavy chain signature 313 334 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4939g00001 1028 PRINTS Kinesin heavy chain signature 78 99 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4939g00001 1028 PRINTS Kinesin heavy chain signature 259 277 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4939g00001 1028 PRINTS Kinesin heavy chain signature 216 233 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4939g00001 1028 ProSiteProfiles Kinesin motor domain profile. 8 363 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium4939g00001 1028 CDD KISc_KIF4 7 364 - -
Vium4939g00001 1028 MobiDBLite consensus disorder prediction 692 716 - -
Vium4939g00001 1028 Coils Coil 861 895 - -
Vium4939g00001 1028 Coils Coil 567 639 - -
Vium4939g00001 1028 Gene3D Kinesin motor domain 2 391 IPR036961 -
Vium4939g00001 1028 Pfam Kinesin motor domain 15 363 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4939g00001 Vium-Chr4939 15185 26600 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4939g00001 9 387 Calmodulin-binding Proteins AT5G65930 33.420 2.53e-53 201