Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4936g00022 ATGTCATCCACCACAACGGATTCAGACTCTGCATTTTTGGAACAAATTCAGCACTATCTCCTTCACAATGATTCAACCATTGTAACACCATCTCAAGCTTTTCCTTACCCTAGCCATGCCACTTGTTCGGATGCAAGTGTCGATTTTTCGCACCCCACTGAAGCGCGTGATGAGAACGCGCCACCCAAGTGGAGGCGTTACAGGGGTGTGAGGCGACGGCCGTGGGGAAAGTTCGCAGCCGAGATAAGGGACCCAAAGAAAAACGGTGCTAGGGTTTGGCTGGGAACTTACGTGACTGAAGAGGAAGCTGCTTTGGCTTATGACAAAGCTGCCTTCAAAATGCGAGGCCGAAAAGCTAAACTGAATTTTCCTCATCTCATTGACTCTGATGTGTCATCGGAGCCACCAAGTTCGGCGGCTTTGAAGCGGAGCTTGCCAGAATCTTGTCCACCGCCTCCACCATCATCATCATCAATGGATGATAGTAGTTGTAAGTCACAAGGGTCAAAGAGGAGAAAGAACTTACTAAATAACTTAGCCAAGAATGGAAGAAGCCAAGCCAAGGTGGTGGAAATGGCTTTAGAGGCAAATGTGGTTCAACAATGGGTGAATGATTTCAGTGATTGCACTCAAATCTGGTGTTCCTAG 648 0.4769 MSSTTTDSDSAFLEQIQHYLLHNDSTIVTPSQAFPYPSHATCSDASVDFSHPTEARDENAPPKWRRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYVTEEEAALAYDKAAFKMRGRKAKLNFPHLIDSDVSSEPPSSAALKRSLPESCPPPPPSSSSMDDSSCKSQGSKRRKNLLNNLAKNGRSQAKVVEMALEANVVQQWVNDFSDCTQIWCS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4936g00022 215 MobiDBLite consensus disorder prediction 127 170 - -
Vium4936g00022 215 CDD AP2 74 126 IPR001471 GO:0003700|GO:0006355
Vium4936g00022 215 Gene3D AP2/ERF domain 65 125 IPR036955 GO:0003700|GO:0006355
Vium4936g00022 215 PANTHER DNA-BINDING DOMAIN 45 177 IPR044808 GO:0003700|GO:0009873
Vium4936g00022 215 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Vium4936g00022 215 PRINTS Ethylene responsive element binding protein signature 106 126 IPR001471 GO:0003700|GO:0006355
Vium4936g00022 215 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Vium4936g00022 215 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Vium4936g00022 215 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Vium4936g00022 215 SUPERFAMILY DNA-binding domain 66 125 IPR016177 GO:0003677
Vium4936g00022 215 FunFam Ethylene-responsive transcription factor 2 65 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4936g00022 Vium-Chr4936 116526 117455 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4936g00022 53 129 AP2-EREBP Transcription Factor Family AT2G44840 75.641 2.20e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium4936g00022 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4936g00022 K09286 - gmx:102663872 286.574