Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4936g00005 ATGAATCGTAGAGTGAGGAGGAAAGTGGCAAGGAAAAGTAAAGGGAATGTGGTGCAATCTAGTTCCCCTGAAGTTCAGGAGGAGGTTTTGCATTTGGAACCCCAAGGAGTTGTTGATTGGAACTGCTTGCCTGATGACACAGTAATTCAGCTGTTGTCATGTCTGAGTTACCGAGATCGAGCTAGCTTGTCGTCAACTTGTAAAACATGGAGGTCTCTTGGTAGCTCCCCGTGTCTGTGGACTTCTCTGGATCTTCGTTCGCACAGGTTTGATGCTGACATGGCTTCATCACTTGCTCCCAGGTGTGTGCATCTACAGAAGCTCAGGTTTCGGGGGGAGGAATCTGCTAATGCAATAATTCATCTTCGAGCTAAGAACTTGCGTGAATTGAGCGGTGACTATTGCAGGAAGATTAGTGATGCAACTCTTTCAGTGATTGTAGCTCGGCATGAGGCACTTGAGAGCCTTCAGCTTGGACCAGATTTTTGTGAGAGAATAAGTAGTGATGCTATTAAAGCAATAGCTCATTGCTGTCCTAACTTGAGTAAGCTCAGACTCTCGGGTATCAGGGATGTAAATGGTGATGCTATTAATGTTTTGGCTAAGCATTGTCCAAAGTTGACTGATATTGGTTTCATTGACTGTCTGAATGTTGACGAGGTTGCACTGGGAAATGTGTTATCAGTTCGTTTCCTTTCTGTGGCGGGGACTTCAAGTATGAAGTGGGGTGTGGTTTCCCATCTTTGGCATAAACTTCCTAACCTGATTGGGTTAGATGTTTCAAGAACTGATATTGGACCATCCGCTGTTTTCAGACTGTTATCCTTAACACAGAATTTGAGGGTTTTGATTGCTCTGAATTGTCCTATCCTCGAAGAGGACACTAGCTTTTCTGCTAGTAAATATAAAAACAAGTTATTAGTTTCCCTTCGTACTGATATTTTTAAAGGACTGGCTTCTTTATTTTTTGATAATACAAAGAGAGGAAAAAATGTGTTTTTGAACTGGAGGACCTCAAAGAATAATGATAAGGATCTTAATGAAATTATACCCTGGCTTGAGTGGATGCTGTCTCACACACTTTTGCGTTCTGCTGAGAGTCCTCAGCAGGGTCTTGATAATTTCTGGGTTGAACAAGGTGGAGCACTTTTGCTTAGTCTAATGCAGAGTTCTCAGGAGGATGTTCAAGAGAGGGCAGCCACAGGACTTGCAACTTTTGTTGTAATTGATGACGAAAATGCTAGCATAGATTGTGGAAGGGCTGAAGCAGTTATGCGAGATGGAGGCATACGCCTCCTACTTGGCCTGGCAAAGTCTTGGAGGGAAGGGCTTCAATCTGAGGCGGCCAAGGCCATTGCAAATTTGTCTGTCAATGCCAATGTGGCCAAAGCTGTTGCAGAAGAAGGTGGGATTGAGATTCTTGCTGGTTTGGCTAGGTCTATGAACAAGCTGGTGGCTGAAGAGGCTGCCGGAGGATTATGGAATCTCTCTGTTGGAGAAGAGCACAAGGGTGCTATTGCTGAAGCCGGTGGAATACAAGCTTTAGTGGATCTTATCTTCAAGTGGTCCTCTAGTGGAGATGGAGTTTTAGAACGGGCGGCTGGTGCATTGGCTAATTTGGCAGCCGATGACAAGTGTAGTACAGAGGTTGCACTGGCAGGAGGTGTGCATGCTCTGGTGATGCTTGCACGTAAGTGCAAATTTGAGGGAGTGCAAGAGCAGGCTGCTCGTGCATTGGCTAACTTAGCTGCTCATGGAGATAGTAACAGTAACAATGCTGCCGTTGGACAAGAAGCAGGTGCTCTTGAGGCTCTTGTTCAACTTACTCGTTCTCCCCACGAGGGCGTTAGGCAAGAGGCTGCAGGTGCACTTTGGAATTTGTCATTTGACGATAGAAATCGAGAAGCCATTGCCGCATCTGGTGGAGTTCAGGCCTTGGTTGCTCTTGCCCAAGCTTGTGCTAATGCCTCCCCTGGACTTCAAGAGAGGGCTGCTGGAGCTCTGTGGGGATTATCAGTCTCGGAAACTAATAGTGTTGCCATTGGACGAGAAGGAGGTGTTGCACCTCTGATTGCACTTGCACGCTCTGAAGCAGAGGATGTTCATGAAACTGCTGCAGGGGCACTATGGAATCTTGCTTTCAATGCTAGTAATGCTCTACGAATAGTAGAGGAAGGTGGAGTATCTGCGCTTGTTGATCTCTGTTCTTCATCAGTATCAAAAATGGCACGCTTCATGGCTGCTTTGGCATTGGCTTACATGTTTGACGGGAGAATGGATGAATATGCTTTAGTAGGCACTCCATCTGAAAGTACTTCTAAGAGTGTGAGCTTGGATGGAGCTAGAAGGATGGCTTTGAAACACATTGAAGCTTTTGTTCTAATGTTCTCTGATCCACAAGCATTTGCGGCTGCTGCTGCGTCATCTGCTCCTGCAGCATTAGCACAGGTTACTGAAGGTGCACGTATTCAAGAAGCGGGACATCTAAGATGCAGTGGTGCTGAAATTGGAAGATTCATCACTATGCTACGAAATCAATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAGTTTACAATTCCTGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAGAGCTTGGGAGCACCCCGAGTTCTGCGTGGTGCGGCTGCAGCAGCAACCGCTCCACTTGAAGCAAAAATCTTTGCCCGAATTGTTCTTCGCAATCTTGAGTATCACCAGATAGAGCATACAGTGTAG 2757 0.461 MNRRVRRKVARKSKGNVVQSSSPEVQEEVLHLEPQGVVDWNCLPDDTVIQLLSCLSYRDRASLSSTCKTWRSLGSSPCLWTSLDLRSHRFDADMASSLAPRCVHLQKLRFRGEESANAIIHLRAKNLRELSGDYCRKISDATLSVIVARHEALESLQLGPDFCERISSDAIKAIAHCCPNLSKLRLSGIRDVNGDAINVLAKHCPKLTDIGFIDCLNVDEVALGNVLSVRFLSVAGTSSMKWGVVSHLWHKLPNLIGLDVSRTDIGPSAVFRLLSLTQNLRVLIALNCPILEEDTSFSASKYKNKLLVSLRTDIFKGLASLFFDNTKRGKNVFLNWRTSKNNDKDLNEIIPWLEWMLSHTLLRSAESPQQGLDNFWVEQGGALLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILAGLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIQALVDLIFKWSSSGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARKCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAASGGVQALVALAQACANASPGLQERAAGALWGLSVSETNSVAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNASNALRIVEEGGVSALVDLCSSSVSKMARFMAALALAYMFDGRMDEYALVGTPSESTSKSVSLDGARRMALKHIEAFVLMFSDPQAFAAAAASSAPAALAQVTEGARIQEAGHLRCSGAEIGRFITMLRNQSSILKACAAFALLQFTIPGGRHAMHHASLMQSLGAPRVLRGAAAAATAPLEAKIFARIVLRNLEYHQIEHTV 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4936g00005 918 Gene3D Ribonuclease Inhibitor 33 318 IPR032675 -
Vium4936g00005 918 FunFam Protein ARABIDILLO 2 355 502 - -
Vium4936g00005 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 641 686 IPR000225 GO:0005515
Vium4936g00005 918 SMART arm_5 589 629 IPR000225 GO:0005515
Vium4936g00005 918 SMART arm_5 458 498 IPR000225 GO:0005515
Vium4936g00005 918 SMART arm_5 630 673 IPR000225 GO:0005515
Vium4936g00005 918 SMART arm_5 715 756 IPR000225 GO:0005515
Vium4936g00005 918 SMART arm_5 417 457 IPR000225 GO:0005515
Vium4936g00005 918 SMART arm_5 499 542 IPR000225 GO:0005515
Vium4936g00005 918 SMART arm_5 674 714 IPR000225 GO:0005515
Vium4936g00005 918 SMART arm_5 543 584 IPR000225 GO:0005515
Vium4936g00005 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 600 642 IPR000225 GO:0005515
Vium4936g00005 918 SMART fbox_2 43 83 IPR001810 GO:0005515
Vium4936g00005 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 510 555 IPR000225 GO:0005515
Vium4936g00005 918 SUPERFAMILY RNI-like 39 293 - -
Vium4936g00005 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 685 727 IPR000225 GO:0005515
Vium4936g00005 918 Pfam F-box-like 40 86 IPR001810 GO:0005515
Vium4936g00005 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515
Vium4936g00005 918 MobiDBLite consensus disorder prediction 1 24 - -
Vium4936g00005 918 Pfam Armadillo/beta-catenin-like repeat 630 672 IPR000225 GO:0005515
Vium4936g00005 918 Pfam Armadillo/beta-catenin-like repeat 500 542 IPR000225 GO:0005515
Vium4936g00005 918 Pfam Armadillo/beta-catenin-like repeat 463 497 IPR000225 GO:0005515
Vium4936g00005 918 Pfam Armadillo/beta-catenin-like repeat 592 628 IPR000225 GO:0005515
Vium4936g00005 918 Pfam Armadillo/beta-catenin-like repeat 553 584 IPR000225 GO:0005515
Vium4936g00005 918 Pfam Armadillo/beta-catenin-like repeat 677 713 IPR000225 GO:0005515
Vium4936g00005 918 Pfam Armadillo/beta-catenin-like repeat 422 456 IPR000225 GO:0005515
Vium4936g00005 918 Gene3D - 358 479 IPR011989 -
Vium4936g00005 918 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 511 IPR000225 GO:0005515
Vium4936g00005 918 SUPERFAMILY ARM repeat 365 744 IPR016024 -
Vium4936g00005 918 PANTHER PROTEIN ARABIDILLO 1 1 915 - -
Vium4936g00005 918 ProSiteProfiles F-box domain profile. 37 83 IPR001810 GO:0005515
Vium4936g00005 918 Gene3D - 480 764 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4936g00005 Vium-Chr4936 49535 60336 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4936g00005 571 758 U-box Gene Family AT2G23140 34.921 1.01e-19 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4936g00005 - - gmx:100819086 1621.68