Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium4936g00005 | ATGAATCGTAGAGTGAGGAGGAAAGTGGCAAGGAAAAGTAAAGGGAATGTGGTGCAATCTAGTTCCCCTGAAGTTCAGGAGGAGGTTTTGCATTTGGAACCCCAAGGAGTTGTTGATTGGAACTGCTTGCCTGATGACACAGTAATTCAGCTGTTGTCATGTCTGAGTTACCGAGATCGAGCTAGCTTGTCGTCAACTTGTAAAACATGGAGGTCTCTTGGTAGCTCCCCGTGTCTGTGGACTTCTCTGGATCTTCGTTCGCACAGGTTTGATGCTGACATGGCTTCATCACTTGCTCCCAGGTGTGTGCATCTACAGAAGCTCAGGTTTCGGGGGGAGGAATCTGCTAATGCAATAATTCATCTTCGAGCTAAGAACTTGCGTGAATTGAGCGGTGACTATTGCAGGAAGATTAGTGATGCAACTCTTTCAGTGATTGTAGCTCGGCATGAGGCACTTGAGAGCCTTCAGCTTGGACCAGATTTTTGTGAGAGAATAAGTAGTGATGCTATTAAAGCAATAGCTCATTGCTGTCCTAACTTGAGTAAGCTCAGACTCTCGGGTATCAGGGATGTAAATGGTGATGCTATTAATGTTTTGGCTAAGCATTGTCCAAAGTTGACTGATATTGGTTTCATTGACTGTCTGAATGTTGACGAGGTTGCACTGGGAAATGTGTTATCAGTTCGTTTCCTTTCTGTGGCGGGGACTTCAAGTATGAAGTGGGGTGTGGTTTCCCATCTTTGGCATAAACTTCCTAACCTGATTGGGTTAGATGTTTCAAGAACTGATATTGGACCATCCGCTGTTTTCAGACTGTTATCCTTAACACAGAATTTGAGGGTTTTGATTGCTCTGAATTGTCCTATCCTCGAAGAGGACACTAGCTTTTCTGCTAGTAAATATAAAAACAAGTTATTAGTTTCCCTTCGTACTGATATTTTTAAAGGACTGGCTTCTTTATTTTTTGATAATACAAAGAGAGGAAAAAATGTGTTTTTGAACTGGAGGACCTCAAAGAATAATGATAAGGATCTTAATGAAATTATACCCTGGCTTGAGTGGATGCTGTCTCACACACTTTTGCGTTCTGCTGAGAGTCCTCAGCAGGGTCTTGATAATTTCTGGGTTGAACAAGGTGGAGCACTTTTGCTTAGTCTAATGCAGAGTTCTCAGGAGGATGTTCAAGAGAGGGCAGCCACAGGACTTGCAACTTTTGTTGTAATTGATGACGAAAATGCTAGCATAGATTGTGGAAGGGCTGAAGCAGTTATGCGAGATGGAGGCATACGCCTCCTACTTGGCCTGGCAAAGTCTTGGAGGGAAGGGCTTCAATCTGAGGCGGCCAAGGCCATTGCAAATTTGTCTGTCAATGCCAATGTGGCCAAAGCTGTTGCAGAAGAAGGTGGGATTGAGATTCTTGCTGGTTTGGCTAGGTCTATGAACAAGCTGGTGGCTGAAGAGGCTGCCGGAGGATTATGGAATCTCTCTGTTGGAGAAGAGCACAAGGGTGCTATTGCTGAAGCCGGTGGAATACAAGCTTTAGTGGATCTTATCTTCAAGTGGTCCTCTAGTGGAGATGGAGTTTTAGAACGGGCGGCTGGTGCATTGGCTAATTTGGCAGCCGATGACAAGTGTAGTACAGAGGTTGCACTGGCAGGAGGTGTGCATGCTCTGGTGATGCTTGCACGTAAGTGCAAATTTGAGGGAGTGCAAGAGCAGGCTGCTCGTGCATTGGCTAACTTAGCTGCTCATGGAGATAGTAACAGTAACAATGCTGCCGTTGGACAAGAAGCAGGTGCTCTTGAGGCTCTTGTTCAACTTACTCGTTCTCCCCACGAGGGCGTTAGGCAAGAGGCTGCAGGTGCACTTTGGAATTTGTCATTTGACGATAGAAATCGAGAAGCCATTGCCGCATCTGGTGGAGTTCAGGCCTTGGTTGCTCTTGCCCAAGCTTGTGCTAATGCCTCCCCTGGACTTCAAGAGAGGGCTGCTGGAGCTCTGTGGGGATTATCAGTCTCGGAAACTAATAGTGTTGCCATTGGACGAGAAGGAGGTGTTGCACCTCTGATTGCACTTGCACGCTCTGAAGCAGAGGATGTTCATGAAACTGCTGCAGGGGCACTATGGAATCTTGCTTTCAATGCTAGTAATGCTCTACGAATAGTAGAGGAAGGTGGAGTATCTGCGCTTGTTGATCTCTGTTCTTCATCAGTATCAAAAATGGCACGCTTCATGGCTGCTTTGGCATTGGCTTACATGTTTGACGGGAGAATGGATGAATATGCTTTAGTAGGCACTCCATCTGAAAGTACTTCTAAGAGTGTGAGCTTGGATGGAGCTAGAAGGATGGCTTTGAAACACATTGAAGCTTTTGTTCTAATGTTCTCTGATCCACAAGCATTTGCGGCTGCTGCTGCGTCATCTGCTCCTGCAGCATTAGCACAGGTTACTGAAGGTGCACGTATTCAAGAAGCGGGACATCTAAGATGCAGTGGTGCTGAAATTGGAAGATTCATCACTATGCTACGAAATCAATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAGTTTACAATTCCTGGTGGACGACATGCCATGCACCATGCTAGCCTCATGCAGAGCTTGGGAGCACCCCGAGTTCTGCGTGGTGCGGCTGCAGCAGCAACCGCTCCACTTGAAGCAAAAATCTTTGCCCGAATTGTTCTTCGCAATCTTGAGTATCACCAGATAGAGCATACAGTGTAG | 2757 | 0.461 | MNRRVRRKVARKSKGNVVQSSSPEVQEEVLHLEPQGVVDWNCLPDDTVIQLLSCLSYRDRASLSSTCKTWRSLGSSPCLWTSLDLRSHRFDADMASSLAPRCVHLQKLRFRGEESANAIIHLRAKNLRELSGDYCRKISDATLSVIVARHEALESLQLGPDFCERISSDAIKAIAHCCPNLSKLRLSGIRDVNGDAINVLAKHCPKLTDIGFIDCLNVDEVALGNVLSVRFLSVAGTSSMKWGVVSHLWHKLPNLIGLDVSRTDIGPSAVFRLLSLTQNLRVLIALNCPILEEDTSFSASKYKNKLLVSLRTDIFKGLASLFFDNTKRGKNVFLNWRTSKNNDKDLNEIIPWLEWMLSHTLLRSAESPQQGLDNFWVEQGGALLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILAGLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIQALVDLIFKWSSSGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARKCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAASGGVQALVALAQACANASPGLQERAAGALWGLSVSETNSVAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNASNALRIVEEGGVSALVDLCSSSVSKMARFMAALALAYMFDGRMDEYALVGTPSESTSKSVSLDGARRMALKHIEAFVLMFSDPQAFAAAAASSAPAALAQVTEGARIQEAGHLRCSGAEIGRFITMLRNQSSILKACAAFALLQFTIPGGRHAMHHASLMQSLGAPRVLRGAAAAATAPLEAKIFARIVLRNLEYHQIEHTV | 918 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium4936g00005 | 918 | Gene3D | Ribonuclease Inhibitor | 33 | 318 | IPR032675 | - | |
Vium4936g00005 | 918 | FunFam | Protein ARABIDILLO 2 | 355 | 502 | - | - | |
Vium4936g00005 | 918 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 641 | 686 | IPR000225 | GO:0005515 | |
Vium4936g00005 | 918 | SMART | arm_5 | 589 | 629 | IPR000225 | GO:0005515 | |
Vium4936g00005 | 918 | SMART | arm_5 | 458 | 498 | IPR000225 | GO:0005515 | |
Vium4936g00005 | 918 | SMART | arm_5 | 630 | 673 | IPR000225 | GO:0005515 | |
Vium4936g00005 | 918 | SMART | arm_5 | 715 | 756 | IPR000225 | GO:0005515 | |
Vium4936g00005 | 918 | SMART | arm_5 | 417 | 457 | IPR000225 | GO:0005515 | |
Vium4936g00005 | 918 | SMART | arm_5 | 499 | 542 | IPR000225 | GO:0005515 | |
Vium4936g00005 | 918 | SMART | arm_5 | 674 | 714 | IPR000225 | GO:0005515 | |
Vium4936g00005 | 918 | SMART | arm_5 | 543 | 584 | IPR000225 | GO:0005515 | |
Vium4936g00005 | 918 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 600 | 642 | IPR000225 | GO:0005515 | |
Vium4936g00005 | 918 | SMART | fbox_2 | 43 | 83 | IPR001810 | GO:0005515 | |
Vium4936g00005 | 918 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 510 | 555 | IPR000225 | GO:0005515 | |
Vium4936g00005 | 918 | SUPERFAMILY | RNI-like | 39 | 293 | - | - | |
Vium4936g00005 | 918 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 685 | 727 | IPR000225 | GO:0005515 | |
Vium4936g00005 | 918 | Pfam | F-box-like | 40 | 86 | IPR001810 | GO:0005515 | |
Vium4936g00005 | 918 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 428 | 470 | IPR000225 | GO:0005515 | |
Vium4936g00005 | 918 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Vium4936g00005 | 918 | Pfam | Armadillo/beta-catenin-like repeat | 630 | 672 | IPR000225 | GO:0005515 | |
Vium4936g00005 | 918 | Pfam | Armadillo/beta-catenin-like repeat | 500 | 542 | IPR000225 | GO:0005515 | |
Vium4936g00005 | 918 | Pfam | Armadillo/beta-catenin-like repeat | 463 | 497 | IPR000225 | GO:0005515 | |
Vium4936g00005 | 918 | Pfam | Armadillo/beta-catenin-like repeat | 592 | 628 | IPR000225 | GO:0005515 | |
Vium4936g00005 | 918 | Pfam | Armadillo/beta-catenin-like repeat | 553 | 584 | IPR000225 | GO:0005515 | |
Vium4936g00005 | 918 | Pfam | Armadillo/beta-catenin-like repeat | 677 | 713 | IPR000225 | GO:0005515 | |
Vium4936g00005 | 918 | Pfam | Armadillo/beta-catenin-like repeat | 422 | 456 | IPR000225 | GO:0005515 | |
Vium4936g00005 | 918 | Gene3D | - | 358 | 479 | IPR011989 | - | |
Vium4936g00005 | 918 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 469 | 511 | IPR000225 | GO:0005515 | |
Vium4936g00005 | 918 | SUPERFAMILY | ARM repeat | 365 | 744 | IPR016024 | - | |
Vium4936g00005 | 918 | PANTHER | PROTEIN ARABIDILLO 1 | 1 | 915 | - | - | |
Vium4936g00005 | 918 | ProSiteProfiles | F-box domain profile. | 37 | 83 | IPR001810 | GO:0005515 | |
Vium4936g00005 | 918 | Gene3D | - | 480 | 764 | IPR011989 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium4936g00005 | Vium-Chr4936 | 49535 | 60336 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium4936g00005 | 571 | 758 | U-box Gene Family | AT2G23140 | 34.921 | 1.01e-19 | 92.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium4936g00005 | - | - | gmx:100819086 | 1621.68 |