Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4928g00014 ATGAGCAGATCTCGCAGCTCATGCAATGCAAGCCGCTATCCGAGCACCAGGTTTGTTTTCTCCTCAGTTTTATGTGAGAAGGCTAAGGAAATTTTGATGGATGAAAGTAATGTCCAGCCTGTGAAAAGCCCCGTGACAATTTGTGGTGATATTCACGGGCAGTTTCATGATCTTGCAGAACTATTTCGAATTGGAGGGAAGTGTCCAGATACTAATTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTCGAAACTGTAACACTTCTTGTGTCACTGAAAGTGCGATATCCTCAGCGAATTACTATTCTTAGAGGAAATCATGAAAGTCGTCAGATCACTCAAGTATATGGTTTTTACGACGAGTGCCTCAGAAAGTATGGTAATGCTAATGTTTGGAAGACCTTTACAGACCTTTTTGATTTCTTTCCGTTGACTGCATTGGTTGAGTCCGAAATATTCTGTTTGCATGGTGGGCTTTCACCTTCAATTGAGACTCTTGATAACATAAGGAACTTTGATCGTGTTCAAGAAGTTCCTCATGAAGGGCCGATGTGTGATCTATTATGGTCTGACCCTGATGATAGGTGTGGCTGGGGAATTTCTCCTCGTGGTGCAGGATATACTTTTGGTCAGGATATATCCGAACAATTTAATCACTCAAACAAGCTTAAGTTAATCGCTAGAGCTCATCAGCTGGTCATGGATGGATTTAACTGGGCTCATGAACAGAAGGTGGTTACCATTTTTAGTGCACCTAACTACTGTTACCGATGTGGGAACATGGCTTCAATTTTGGAGGTTGACGATTCCAAGGGCCACACATTTATCCAGTTTGACCCTGCTCCCAGAAGAGGAGAACCTGATGTTACCCGTAGAACGCCTGATTACTTCCTATGA 909 0.4257 MSRSRSSCNASRYPSTRFVFSSVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHSNKLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDSKGHTFIQFDPAPRRGEPDVTRRTPDYFL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4928g00014 302 CDD MPP_PP2A_PP4_PP6 24 286 - -
Vium4928g00014 302 SMART pp2a_7 19 286 IPR006186 GO:0016787
Vium4928g00014 302 Pfam Calcineurin-like phosphoesterase 44 235 IPR004843 GO:0016787
Vium4928g00014 302 FunFam Serine/threonine-protein phosphatase 14 302 - -
Vium4928g00014 302 SUPERFAMILY Metallo-dependent phosphatases 23 287 IPR029052 -
Vium4928g00014 302 Gene3D - 15 302 IPR029052 -
Vium4928g00014 302 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 23 302 IPR047129 GO:0004722
Vium4928g00014 302 PRINTS Serine/threonine phosphatase family signature 248 264 IPR006186 GO:0016787
Vium4928g00014 302 PRINTS Serine/threonine phosphatase family signature 226 246 IPR006186 GO:0016787
Vium4928g00014 302 PRINTS Serine/threonine phosphatase family signature 141 167 IPR006186 GO:0016787
Vium4928g00014 302 PRINTS Serine/threonine phosphatase family signature 44 71 IPR006186 GO:0016787
Vium4928g00014 302 PRINTS Serine/threonine phosphatase family signature 73 100 IPR006186 GO:0016787
Vium4928g00014 302 PRINTS Serine/threonine phosphatase family signature 106 130 IPR006186 GO:0016787
Vium4928g00014 302 PRINTS Serine/threonine phosphatase family signature 170 197 IPR006186 GO:0016787
Vium4928g00014 302 ProSitePatterns Serine/threonine specific protein phosphatases signature. 107 112 IPR006186 GO:0016787
Vium4928g00014 302 MobiDBLite consensus disorder prediction 283 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4928g00014 Vium-Chr4928 98634 105516 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4928g00014 19 232 Calmodulin-binding Proteins AT5G63870 35.547 7.09e-34 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4928g00014 K04382 - gmx:100817449 583.178