Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4928g00011 ATGGCAGTGTTCTCTTCATTCTCACGCCGCTTATTCAGAAAACAGTTTCCCCTCTTCTCCTTCTATTTCTCATTCTCCACAGTTTCGCCATCTCCGCCTCCGATCCGAGTCGCGCTCACCGAGTCCGTCGGCCGCGCCGTCTTCGCCACGCGCCCCATCGCGGCCGCCGACCTCGTCCACACCGCCAGCCCCGCCGTTTGCCATCCCTACTCCGGCCGCGCCTCCTGCTACTCCTGTCTCGCCGCGCTCTCCAACTCCCAACCACTCCGCGCGCCTTTTTGCAGCCAACACTGTCACCAACGATCCAAGGGATATTACGATGTTGAGATGAAAGCAAATTGGGTGGCTTTTGATGACTATTGTGGGTCTCGTGGTTTGAAGTATCCCTTTCTGGTAAAGCGATTGGCTTGCATGGTCATAGCAGGAGATGCCAGAAGTGACACTCTTGACATACTCCAGCCTGCCAATTTTACTCCTGAGATGGTATCAAAGATGGAAGAAGAGTTTGTCTTGCTAAGGAATGCCTTTGCGGAGGCACTTATTGGAGATGATCATATTGCCTTTTTAACCAAGCAATGGTACATTAATGTTTTGGCTCGAATTCGAATCAATGCATTTCGCATTGAGTTGGTCGGAGGACTGTATGAAGATCTTCTTTCATTAGCTGTTGCATCTGTCGAAGCTGAGGCTGCTGTTGGAAATGCTGTCTATATACTTCCGTCCTTCTACAATCATGATTGTGATCCTAATGCACACATCATATGGATAGATAACGCTCATGCAAAATTGAAGGCACTCCGTGACATTGATGAAGGTGAAGAACTCAGAATCTGCTATATTGATGCCAGCCTGGAACGCGATGCCAGAAGAGAGCTTCTGTTTCAAGGTTTTGGTTTTCAATGCAATTGTAGTAGGTGCTTACATGGCGATTAA 933 0.4887 MAVFSSFSRRLFRKQFPLFSFYFSFSTVSPSPPPIRVALTESVGRAVFATRPIAAADLVHTASPAVCHPYSGRASCYSCLAALSNSQPLRAPFCSQHCHQRSKGYYDVEMKANWVAFDDYCGSRGLKYPFLVKRLACMVIAGDARSDTLDILQPANFTPEMVSKMEEEFVLLRNAFAEALIGDDHIAFLTKQWYINVLARIRINAFRIELVGGLYEDLLSLAVASVEAEAAVGNAVYILPSFYNHDCDPNAHIIWIDNAHAKLKALRDIDEGEELRICYIDASLERDARRELLFQGFGFQCNCSRCLHGD 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4928g00011 310 Gene3D - 75 123 - -
Vium4928g00011 310 Gene3D - 124 205 - -
Vium4928g00011 310 CDD SET_SMYD 233 306 - -
Vium4928g00011 310 ProSiteProfiles SET domain profile. 33 280 IPR001214 GO:0005515
Vium4928g00011 310 Pfam SET domain 44 279 IPR001214 GO:0005515
Vium4928g00011 310 SUPERFAMILY SET domain 32 306 IPR046341 -
Vium4928g00011 310 SMART set_7 33 286 IPR001214 GO:0005515
Vium4928g00011 310 Gene3D SET domain 46 306 IPR046341 -
Vium4928g00011 310 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 31 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4928g00011 Vium-Chr4928 56022 60814 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium4928g00011 SET 4.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4928g00011 - - gmx:100801270 506.523