Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4928g00008 ATGAGGGGAAGAAGCTACAGTTATAGTCCGTCACCTCCAAGGCATTACAGCCGAAGAAGGCGCAGTCCCAGCCCTAGGGGCAGATACAGAGGACATGATAGAGATTTGCCAACTAGTCTTTTGGTTCGAAACCTTCACAGAGATTGCAGGGCGGAAGATCTGCATGGTCCATTTGGCCAATTTGGTCCTGTTAAGGACGTTTACCTGCCTCGAGATTATTATACAGGGGATCCAAGAGGTTTCGGGTTTGTCCAGTACGTGGACCCAGCTGATGCTGCGGATGCAAAACATCACATGGACGGTCAAATTCTTCTTGGTCGCGAGTTAACTGTGGTGTTTGCTGAAGAAAACAGGAAGAAACCTTCTGAAATGAGAGCAAGGGAACGGAGGAGGGATCGATCATATGATTACAGGAGATCGCCTCGAACCTATTCTCCTAGTCCGGACTATTCGTCTTCTCCAAGACGAAGACGACATTACAGGTCAATCTCACCAAGGGACAGAAAATATAGCGATCGATCATACTCTAGGTCACCTTATGGATCAAGAATCCGCAGCAGAAGCAGAAGTTACAGCAGGAGCTTGAGCGCAAGTCCTGGCTACTCTAGGTGA 612 0.4837 MRGRSYSYSPSPPRHYSRRRRSPSPRGRYRGHDRDLPTSLLVRNLHRDCRAEDLHGPFGQFGPVKDVYLPRDYYTGDPRGFGFVQYVDPADAADAKHHMDGQILLGRELTVVFAEENRKKPSEMRARERRRDRSYDYRRSPRTYSPSPDYSSSPRRRRHYRSISPRDRKYSDRSYSRSPYGSRIRSRSRSYSRSLSASPGYSR 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4928g00008 203 MobiDBLite consensus disorder prediction 175 203 - -
Vium4928g00008 203 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 37 193 - -
Vium4928g00008 203 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Vium4928g00008 203 MobiDBLite consensus disorder prediction 118 139 - -
Vium4928g00008 203 MobiDBLite consensus disorder prediction 118 203 - -
Vium4928g00008 203 SUPERFAMILY RNA-binding domain, RBD 38 142 IPR035979 GO:0003676
Vium4928g00008 203 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Vium4928g00008 203 Gene3D - 32 196 IPR012677 -
Vium4928g00008 203 MobiDBLite consensus disorder prediction 1 35 - -
Vium4928g00008 203 SMART rrm1_1 39 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4928g00008 Vium-Chr4928 42152 45277 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4928g00008 38 162 Eukaryotic Initiation Factors Gene Family AT4G34110 27.778 5.27e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4928g00008 K12900 - gmx:100816913 210.69