Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4928g00007 ATGAGGGGAAGAAGCTACAGTTATAGTCCGTCACCTCCAAGGCATTACAGCCGAAGAAGGCGCAGTCCCAGCCCTAGGGGCAGATACAGAGGACATGATAGAGATTTGCCAACTAGTCTTTTGGTTCGAAACCTTCACAGAGATTGCAGGGCGGAAGATCTGCATGGTCCATTTGGCCAATTTGGTCCTGTTAAGGACGTTTACCTGCCTCGAGATTATTATACAGGGGATCCAAGAGGTTTCGGGTTTGTCCAGTACGTGGACCCAGCTGATGCTGCGGATGCAAAACATCACATGGACGGTCAAATTCTTCTTGGTCGCGAGTTAACTGTGGTGTTTGCTGAAGAAAACAGGAAGAAACCTTCTGAAATGAGAGCAAGGGAACGGAGGGATCGATCATATGATTACAGGAGATCGCCTCGAACCTATTCTCCTAGTCCGGACTATTCGTCTTCTCCAAGACGAAGACGACATTACAGGTCAATCTCACCAAGGGACAGAAAATATAGCGATCGATCATACTCTAGGTCACCTTATGGATCAAGAATCCGCAGCAGAAGCAGAAGTTACAGCAGGAGCTTGAGCGCAAGTCCTGGCTACTCTAGGTGA 609 0.4828 MRGRSYSYSPSPPRHYSRRRRSPSPRGRYRGHDRDLPTSLLVRNLHRDCRAEDLHGPFGQFGPVKDVYLPRDYYTGDPRGFGFVQYVDPADAADAKHHMDGQILLGRELTVVFAEENRKKPSEMRARERRDRSYDYRRSPRTYSPSPDYSSSPRRRRHYRSISPRDRKYSDRSYSRSPYGSRIRSRSRSYSRSLSASPGYSR 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4928g00007 202 Gene3D - 30 189 IPR012677 -
Vium4928g00007 202 MobiDBLite consensus disorder prediction 118 202 - -
Vium4928g00007 202 MobiDBLite consensus disorder prediction 118 138 - -
Vium4928g00007 202 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Vium4928g00007 202 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Vium4928g00007 202 MobiDBLite consensus disorder prediction 174 202 - -
Vium4928g00007 202 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 32 192 - -
Vium4928g00007 202 SUPERFAMILY RNA-binding domain, RBD 38 141 IPR035979 GO:0003676
Vium4928g00007 202 MobiDBLite consensus disorder prediction 1 35 - -
Vium4928g00007 202 SMART rrm1_1 39 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4928g00007 Vium-Chr4928 42151 45277 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4928g00007 38 147 Eukaryotic Initiation Factors Gene Family AT1G71770 28.182 4.95e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4928g00007 K12900 - gmx:100816913 207.608