Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4928g00005 ATGAGGGGAAGAAGCTACAGTTATAGTCCGTCACCTCCAAGGCATTACAGCCGAAGAAGGCGCAGTCCCAGCCCTAGGGGCAGATACAGAGGACATGATAGAGATTTGCCAACTAGTCTTTTGGTTCGAAACCTTCACAGAGATTGCAGGGCGGAAGATCTGCATGGTCCATTTGGCCAATTTGGTCCTGTTAAGGACGTTTACCTGCCTCGAGATTATTATACAGGGGATCCAAGAGGTTTCGGGTTTGTCCAGTACGTGGACCCAGCTGATGCTGCGGATGCAAAACATCACATGGACGGTCAAATTCTTCTTGGTCGCGAGTTAACTGTGGTGTTTGCTGAAGAAAACAGGAAGAAACCTTCTGAAATGAGAGCAAGGGAACGGAGGAGGAGATCGCCTCGAACCTATTCTCCTAGTCCGGACTATTCGTCTTCTCCAAGACGAAGACGACATTACAGGTCAATCTCACCAAGGGACAGAAAATATAGCGATCGATCATACTCTAGGTCACCTTATGGATCAAGAATCCGCAGCAGAAGCAGAAGTTACAGCAGGAGCTTGAGCGCAAGTCCTGGCTACTCTAGGTGA 591 0.4873 MRGRSYSYSPSPPRHYSRRRRSPSPRGRYRGHDRDLPTSLLVRNLHRDCRAEDLHGPFGQFGPVKDVYLPRDYYTGDPRGFGFVQYVDPADAADAKHHMDGQILLGRELTVVFAEENRKKPSEMRARERRRRSPRTYSPSPDYSSSPRRRRHYRSISPRDRKYSDRSYSRSPYGSRIRSRSRSYSRSLSASPGYSR 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4928g00005 196 SUPERFAMILY RNA-binding domain, RBD 38 143 IPR035979 GO:0003676
Vium4928g00005 196 MobiDBLite consensus disorder prediction 116 136 - -
Vium4928g00005 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Vium4928g00005 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Vium4928g00005 196 MobiDBLite consensus disorder prediction 116 196 - -
Vium4928g00005 196 MobiDBLite consensus disorder prediction 168 196 - -
Vium4928g00005 196 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 37 186 - -
Vium4928g00005 196 Gene3D - 32 191 IPR012677 -
Vium4928g00005 196 MobiDBLite consensus disorder prediction 1 35 - -
Vium4928g00005 196 SMART rrm1_1 39 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4928g00005 Vium-Chr4928 42150 45277 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4928g00005 38 141 Eukaryotic Initiation Factors Gene Family AT1G71770 29.808 1.09e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4928g00005 K12900 - gmx:100816913 193.356