Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4928g00003 ATGGAGTTGCCTTCAAATAACTTGGATCTTGGGCCTAGGCAGATTGAACAAGAGAAAGACGAAGGTCCCTTGTTGCATTGTGATTTTTGTGACATTGAAGTAGTTCATAAGCTGGCTCAAATGTTCATGCCAGCACTAGGCTGTGCCTGCGTTGATAACACAACAGGAGATCCCTTCAAGACCCCTGGTTTTGTGGCTGTTGATTTGAGAAAGGAGATGATAGAATTTGTCACCCAAAAGAGTGAATTATTTGTTGCCGAGTCTATTATCTCTGAGGAGGTTCCTGACGGTGAAGCTTTGGAACACCCTTTTGATATCATTTGTTTTTTTGTTGACGAATTTGTTAATTCAAAGAGAAATTTGTTGAGCCAGTTTTCAGGGTGGTTGCTAAGTGATAAGAGAGAGGACAAAATAGATGATTTTGTTCAGGAGATGGAAAAAAATGGTTTTTGGCCACTGGATAGAAGAGAAACACTTGCCAAAGATTTGCTCAAGAACGTTGACTTCAAAAGCTCATTTCATTGTGGCATGAGTTTTAAATCTGCAGAAGATCTTGCCAACCATGTTGATGCTTGCAACTTCAGGTCTGTGGTATGCCAAAATGACGGGTGCAATGATAGATTCAGTGCTGGTCAATTGAAAGAGCATGATTCAACTTGTGATTTCAAGATAGTTCCATGTGAACAAAATTGCACAGCTAACATCTTGCGACGAGACATGGATAGGCACTGCATAACTGTTTGTCCATTGAAGCTTGTGGATTGCCCTTTCTCTGCCATAGGTTGTAGATCTACAATTGGGCAAAGTATGATTAGAAAACATTGTTCGGATGATGTTGAGTCTCACTTACTACTAATACTTAAAGGCATCCATCAACAAGCATCAGACAAAGATCTTCAAAGACGTGTGGAGCAAATTGTACAGACCTCATCGAAAAGCAAATTAGCAGAGGCTAAGGATGTGAGATCTTTTAAAAGTATTGTCAAGGACCTTGAAGTTAAGCTAGGGTCTCTGGAAGTGAGTGCCAAGGAGAAAACTTGTGCTGAAGTTTCCAAGAATGAAGACAGTGAAGACAATAGAACTGGCTAA 1089 0.4031 MELPSNNLDLGPRQIEQEKDEGPLLHCDFCDIEVVHKLAQMFMPALGCACVDNTTGDPFKTPGFVAVDLRKEMIEFVTQKSELFVAESIISEEVPDGEALEHPFDIICFFVDEFVNSKRNLLSQFSGWLLSDKREDKIDDFVQEMEKNGFWPLDRRETLAKDLLKNVDFKSSFHCGMSFKSAEDLANHVDACNFRSVVCQNDGCNDRFSAGQLKEHDSTCDFKIVPCEQNCTANILRRDMDRHCITVCPLKLVDCPFSAIGCRSTIGQSMIRKHCSDDVESHLLLILKGIHQQASDKDLQRRVEQIVQTSSKSKLAEAKDVRSFKSIVKDLEVKLGSLEVSAKEKTCAEVSKNEDSEDNRTG 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4928g00003 362 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 24 343 - -
Vium4928g00003 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 281 IPR013083 -
Vium4928g00003 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 218 IPR013083 -
Vium4928g00003 362 ProSiteProfiles Zinc finger TRAF-type profile. 216 263 IPR001293 GO:0008270
Vium4928g00003 362 SUPERFAMILY TRAF domain-like 203 268 - -
Vium4928g00003 362 Pfam TRAF-type zinc finger 216 274 IPR001293 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4928g00003 Vium-Chr4928 25996 29072 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium4928g00003 zf-TRAF 4.8e-12 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4928g00003 - - vra:106769987 729.939