Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4928g00002 ATGGTAAATAATAATATTTTTGCATTGGTTCTAAGAAATCGTGTTCTCGAGTATCAGTTCATCAGCTTCTTCCTTAGATCTCATTTTAGACTGATCAGACCACCCTTTCTCGGGCCACCGTCCACGGCAGTTCCGGCAACCACGTTTTGTTCCCTTACTTTTTGTCTTTCTTTGTCTCAGGTTTTATCAAGAATGGAGTTGCCTTCAAATAACTTGGATCTTGGGCCTAGGCAGATTGAACAAGAGAAAGACGAAGGTCCCTTGTTGCATTGTGATTTTTGTGACATTGAAGTAGTTCATAAGCTGGCTCAAATGTTCATGCCAGCACTAGGCTGTGCCTGCGTTGATAACACAACAGGAGATCCCTTCAAGACCCCTGGTTTTGTGGCTGTTGATTTGAGAAAGGAGATGATAGAATTTGTCACCCAAAAGAGTGAATTATTTGTTGCCGAGTCTATTATCTCTGAGGAGGTTCCTGACGGTGAAGCTTTGGAACACCCTTTTGATATCATTTGTTTTTTTGTTGACGAATTTGTTAATTCAAAGAGAAATTTGTTGAGCCAGTTTTCAGGGTGGTTGCTAAGTGATAAGAGAGAGGACAAAATAGATGATTTTGTTCAGGAGATGGAAAAAAATGGTTTTTGGCCACTGGATAGAAGAGAAACACTTGCCAAAGATTTGCTCAAGAACGTTGACTTCAAAAGCTCATTTCATTGTGGCATGAGTTTTAAATCTGCAGAAGATCTTGCCAACCATGTTGATGCTTGCAACTTCAGGTCTGTGGTATGCCAAAATGACGGGTGCAATGATAGATTCAGTGCTGGTCAATTGAAAGAGCATGATTCAACTTGTGATTTCAAGATAGTTCCATGTGAACAAAATTGCACAGCTAACATCTTGCGACGAGACATGGATAGGCACTGCATAACTGTTTGTCCATTGAAGCTTGTGGATTGCCCTTTCTCTGCCATAGGTTGTAGATCTACAATTGGGCAAAGTATGATTAGAAAACATTGTTCGGATGATGTTGAGTCTCACTTACTACTAATACTTAAAGGCATCCATCAACAAGCATCAGACAAAGATCTTCAAAGACGTGTGGAGCAAATTGTACAGACCTCATCGAAAAGCAAATTAGCAGAGGCTAAGGATGTGAGATCTTTTAAAAGTATTGTCAAGGACCTTGAAGTTAAGCTAGGGTCTCTGGAAGTGAGTGCCAAGGAGAAAACTTGTGCTGAAGTTTCCAAGAATGAAGACAGTGAAGACAATAGAACTGGCTAA 1281 0.4036 MVNNNIFALVLRNRVLEYQFISFFLRSHFRLIRPPFLGPPSTAVPATTFCSLTFCLSLSQVLSRMELPSNNLDLGPRQIEQEKDEGPLLHCDFCDIEVVHKLAQMFMPALGCACVDNTTGDPFKTPGFVAVDLRKEMIEFVTQKSELFVAESIISEEVPDGEALEHPFDIICFFVDEFVNSKRNLLSQFSGWLLSDKREDKIDDFVQEMEKNGFWPLDRRETLAKDLLKNVDFKSSFHCGMSFKSAEDLANHVDACNFRSVVCQNDGCNDRFSAGQLKEHDSTCDFKIVPCEQNCTANILRRDMDRHCITVCPLKLVDCPFSAIGCRSTIGQSMIRKHCSDDVESHLLLILKGIHQQASDKDLQRRVEQIVQTSSKSKLAEAKDVRSFKSIVKDLEVKLGSLEVSAKEKTCAEVSKNEDSEDNRTG 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4928g00002 426 ProSiteProfiles Zinc finger TRAF-type profile. 280 327 IPR001293 GO:0008270
Vium4928g00002 426 SUPERFAMILY TRAF domain-like 248 307 - -
Vium4928g00002 426 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 88 407 - -
Vium4928g00002 426 SUPERFAMILY TRAF domain-like 290 343 - -
Vium4928g00002 426 Pfam TRAF-type zinc finger 280 338 IPR001293 GO:0008270
Vium4928g00002 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 344 IPR013083 -
Vium4928g00002 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 282 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4928g00002 Vium-Chr4928 24659 29072 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium4928g00002 zf-TRAF 6.2e-12 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4928g00002 - - vra:106769987 729.939