Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4919g00035 ATGAGATTGTTGGAGTTTGGGTGTGTGTTGGTTGTTGTATCTGCACTTCTGATTTCTGGAGATGCTGAGATTTACATAGTAACTGTTGAAGGTGAGCCTATCATAAGTTACACTGGAGGTATTAGTGGGTTTGAAGCTACTGCAGTGGAATCTGATGAGAAGATTGATACCGAAAGTGAATTGGTTACTTCATATGCTCGCCATCTTGAGAAAAAACATGACATGCTTCTTGGTTTGCTGTTTGAGGAAGGGACATACCAGAAACTCTATAGCTATCGACATCTTATAAACGGGTTTGCTGTTCATATTTCACCGGAACAGGCAGAAACTCTAAGACGTGCTCCGGGAGTGAAATCTGTTGAGAGGGACTGGAAAGTGAGGAAACATACAACACATACCCCACAATTTTTAGGGCTTCCAACTGGGGTTTGGCCAACTGGAGGTGGCTTTGATAGGGCTGGAGAAGACATTGTCATTGGATTTGTGGACTCAGGGATCTATCCTCATCACCCAAGTTTTGCAACTCATAATGCTGAGCCATATGGGCCAGTTCCAAAATATAGAGGAAAATGTGAAGCTGATCCGGATACTAAAAGAAGTTACTGCAACGGCAAGATTGTTGGAGCACAACATTTTGCTCAGGCTGCAATAGCTGCTGGGGCATTTAACCCTATAATTGACTTTGCGTCTCCTCTAGATGGTGATGGGCATGGAAGTCATACGGCCTCTATTGCAGCTGGAAATAATGGAATTCCCGTGAGAATGCATGGACATGAATTTGGGAGAGCCAGCGGGATGGCACCTCGTGCTAGGATTGCTGTGTACAAGGCACTTTATAGACTGTTTGGAGGGTATGTTGCAGATGTAGTTGCTGCAATTGATCAGGCTGTATATGATGGAGTGGATATACTCAGCCTTTCAGTTGGACCCAACAGTCCTCCAGCAGCCACCAGAACTACCTTTTTGAACCCTTTTGATGCTACACTTCTTGGAGCTGTGAAAGCTGGTGTATTTGTTGCACAGGCTGCTGGAAATGGTGGTCCTTTTCCGAAGACAATGGTTTCATATAGTCCATGGATAGCATCGGTAGCAGCTGCAATTGATGATCGTAGATATAAAAATCATTTGATGCTTGGAAATGGAAAAATCTTAGCTGGAATTGGGTTGTCACCTTCCACACATTTGAACGAAACATACACATTGGTTGCTGCAAATGATGTGTTGCTAGATTCTTCAGTTATGAGGTACAGCCCCACAGATTGCCAGAGACCAGAACTTTTAAACAAGAACTTGATAAAGGGAAATATTCTTCTCTGTGGTTATTCCTTCAATTTTGTTGTTGGCACTGCATCAATCAAGAAAGTCTCAGAAACAGCAAAAGCCCTTGCTGCAGTTGGGTTTGTTCTTTGTGTTGAAAATGTTTCCCCAGGAACAAAATTTGATCCAGTCCCTGTCGGCCTTCCTGGGATTCTTATCACCGATGCCAGCTATTCTAAGGAGCTTATAAATTATTATAATATCACTACACCAAGAGATTGGACTGGACGGGTAAAGAGGTTTGAAGGTACAGGTAAAATTGGTGATGGTTTAATGCCTATTCTGCATAAATCTGCACCACAGGTGGCATTATTCTCTGCAAGAGGACCAAATATAAAGGATTTCAGTTTCCAAGAGGCAGATCTTCTCAAACCAGATATATTAGCTCCTGGTTCATTGATTTGGGCTGCTTGGTGTCCAAATGGAACTGATGAGCCAAATTATGTCGGTGAGGGGTTTGCCATGATCTCTGGAACTAGTATGTCTGCACCACATATAGCTGGAATAGCTGCTCTTATAAAGCAGAAGCATCCTCATTGGAGCCCTGCTGCCATTAAATCAGCCTTGATGACAACATCAACAACTCTAGACAGAGCAGGGAATCCTCTTCTAGCCCAGCAAACATCTGAATCAGAAGCTATGAAGCTGGTCAAAGCTACTCCTTTTGATTATGGGAGTGGACATGTTGATCCGACAGCTGCCTTGGATCCTGGACTCATCTTTGATGCAGGATACGAGGACTATCTGGGCTTCTTGTGTACAACACCGGGCATTGACATTCATGAGATAAGGAACTACACTCACACACCATGTAACACCACCATGGGCAAGCCATCAAATTTAAACACCCCTTCTATCACAATTTCCCATCTGGTGAGAACTCAAGTTGTCACACGCACGGTCACAAATGTCGCCGAAGAAGAAACCTATGTGATCACAGCCAGAATGCAGCCGGCTGTTGCCATTGAAGTCAATCCTCCGGCAATGACTATCAAAGCAGGTGCATCACGACAGTTTTCAGTGACACTGACAGTTCGGTCAGTGAGAGGAACCTATAGTTTTGGAGAGGTTTTGATGAAAGGGAACAGAGGGCACAAGGTGAGGATTCCTGTTCTGGCCAATGGATACCGAAGATAG 2454 0.4401 MRLLEFGCVLVVVSALLISGDAEIYIVTVEGEPIISYTGGISGFEATAVESDEKIDTESELVTSYARHLEKKHDMLLGLLFEEGTYQKLYSYRHLINGFAVHISPEQAETLRRAPGVKSVERDWKVRKHTTHTPQFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFATHNAEPYGPVPKYRGKCEADPDTKRSYCNGKIVGAQHFAQAAIAAGAFNPIIDFASPLDGDGHGSHTASIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGYVADVVAAIDQAVYDGVDILSLSVGPNSPPAATRTTFLNPFDATLLGAVKAGVFVAQAAGNGGPFPKTMVSYSPWIASVAAAIDDRRYKNHLMLGNGKILAGIGLSPSTHLNETYTLVAANDVLLDSSVMRYSPTDCQRPELLNKNLIKGNILLCGYSFNFVVGTASIKKVSETAKALAAVGFVLCVENVSPGTKFDPVPVGLPGILITDASYSKELINYYNITTPRDWTGRVKRFEGTGKIGDGLMPILHKSAPQVALFSARGPNIKDFSFQEADLLKPDILAPGSLIWAAWCPNGTDEPNYVGEGFAMISGTSMSAPHIAGIAALIKQKHPHWSPAAIKSALMTTSTTLDRAGNPLLAQQTSESEAMKLVKATPFDYGSGHVDPTAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTHTPCNTTMGKPSNLNTPSITISHLVRTQVVTRTVTNVAEEETYVITARMQPAVAIEVNPPAMTIKAGASRQFSVTLTVRSVRGTYSFGEVLMKGNRGHKVRIPVLANGYRR 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4919g00035 817 Pfam Fibronectin type-III domain 719 811 IPR041469 -
Vium4919g00035 817 CDD PA_subtilisin_like 378 514 - -
Vium4919g00035 817 CDD Peptidases_S8_3 126 633 IPR034197 -
Vium4919g00035 817 Gene3D - 369 534 - -
Vium4919g00035 817 ProSiteProfiles Serine proteases, subtilase domain profile. 123 674 - -
Vium4919g00035 817 Pfam Peptidase inhibitor I9 25 128 IPR010259 -
Vium4919g00035 817 FunFam Subtilisin-like protease SBT1.5 156 378 - -
Vium4919g00035 817 PRINTS Subtilisin serine protease family (S8) signature 596 612 IPR015500 -
Vium4919g00035 817 PRINTS Subtilisin serine protease family (S8) signature 154 173 IPR015500 -
Vium4919g00035 817 PRINTS Subtilisin serine protease family (S8) signature 233 246 IPR015500 -
Vium4919g00035 817 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 19 129 IPR037045 -
Vium4919g00035 817 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 159 170 IPR023827 -
Vium4919g00035 817 SUPERFAMILY Protease propeptides/inhibitors 86 127 - -
Vium4919g00035 817 Pfam Subtilase family 154 638 IPR000209 GO:0006508|GO:0008236
Vium4919g00035 817 Gene3D - 691 814 - -
Vium4919g00035 817 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 83 810 IPR045051 -
Vium4919g00035 817 SUPERFAMILY Subtilisin-like 129 678 IPR036852 GO:0004252|GO:0006508
Vium4919g00035 817 ProSitePatterns Serine proteases, subtilase family, serine active site. 597 607 IPR023828 -
Vium4919g00035 817 Gene3D Peptidase S8/S53 domain 156 687 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4919g00035 Vium-Chr4919 188200 195259 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4919g00035 4 817 Subtilisin-like Serine Gene Family AT4G30020 80.025 0.0 1357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4919g00035 - - gmx:100787619 1533.47