Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4919g00027 ATGCGGGACAGTGTGAAGAAGTCAAACGACAAAGGATCTAAAAAATCTGGTCATTTGAAGGCACGTACAAAAGGGAAGAAGGATAAAGTGAAAGTGGAATCAAAATCTCACACAAAAAATGTTGGCACTGACGTATCAAAGAAGAGAGTTATCTCTTCCCTCAAGATCAAAGGACCTCGTAAGGATTCTTCAGATAAGAAATTGACTACTGGACAGAAATTGCCTTTGAAGAACAGAAAATCTTCACAGAAGCCATCCTCAAAGTTACCAGGCAAAAAAGCTTCTCTTAGCTCTAGAAAAGAGGGGAAAGATGCTGATGGGGAGGTAAAGCTTCAAAAAATGAAGAGAAAGAGAACAAAGAAAAGACAAAGGAATAACTTGGATCTTGATGATCCTTCACGCCTGCAGAGGAGAGCACGGTATCTTTTAATCAAAATGAAGCTAGAGCAGAACCTTATCGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAACGAGCAAGGAAGCAAATTTTAAAATGTAGACTTGGTATTCGTGATGCCATTCGCCAATTGGATTCCCTTGGTTCATTGAGTTGCATTGAAGATTCGGCAATTGCTCCAGGTGGATCTGGTTGTCAGGAACATATATTCTGTGCTAAGTGCAAAATGCGTGAAGAACCTCCACATAATGATGTTATACGATGCTATGGTACATGCAAGCGTGCGTTTCACCAAAAATGTGTGGACCCTTCTTTAGACACTGAAAATGTTCCTCCTGGAGGGCAGGACTGGTTTTGTAATTTTTGTGAATGCAAGATGGAAATACTGGAAGCTATGAATGCTCATCTTGGAACTCACTTCTCCTTGCACAGTGCTTGGCAGGATGTATTCAAAGAAGAGGCTGCTATCCCTGATGGTGAGACTACATTACTGAATCCTGTAGAAGAATGGCCGTCAGATGATTCTGAAGATGATGATTATGACCCAGAGAGGAAAGAAGACAGCCACAATATCAACATGGAAGGAACTAATGATAGTGCGTCTGATGATTTAAGCAGTTCTACCAGTCTGTGTTATTCTGATGATGAACATTCTCCAGTACATGGTGTCAGTCATGAATATCTTTTTGCCAATACCAGCATAGATTCTGATGAGTCTGAGGACAAAGCCTGTGGGCGTAGGCAGCGAAAAGCTGTTGACTACAAGAAGCTTTATGATGAAATGTTTGGGAAGGAAGCTCCTGCATATGAACAATTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTGTGATGCTGTTGATTCTCTTATGACGTTGCATGAAAGTGAGAATATGCACCCCAATAATGAGCACAACAACATGACAAAAATAATTTCTTCAGGCACAAATATCAGAAGGCATTGTTTTAGGATTCCACGTGATTCAGTTGAGAAGCTTCGCCAAGTTTTTGCTGTGAATGAACTTCCTCCAAGATCTATTAGAGAGGATCTTTCAAAAGAGCTAGGACTTGACACTGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTGGCGCTTAAAAGTAGAAAGTCAAATTTTGTAGTCCTTTGGAATTTGCAATGA 1641 0.4089 MRDSVKKSNDKGSKKSGHLKARTKGKKDKVKVESKSHTKNVGTDVSKKRVISSLKIKGPRKDSSDKKLTTGQKLPLKNRKSSQKPSSKLPGKKASLSSRKEGKDADGEVKLQKMKRKRTKKRQRNNLDLDDPSRLQRRARYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCRLGIRDAIRQLDSLGSLSCIEDSAIAPGGSGCQEHIFCAKCKMREEPPHNDVIRCYGTCKRAFHQKCVDPSLDTENVPPGGQDWFCNFCECKMEILEAMNAHLGTHFSLHSAWQDVFKEEAAIPDGETTLLNPVEEWPSDDSEDDDYDPERKEDSHNINMEGTNDSASDDLSSSTSLCYSDDEHSPVHGVSHEYLFANTSIDSDESEDKACGRRQRKAVDYKKLYDEMFGKEAPAYEQLSEDEDWGPGKRKRREKECDAVDSLMTLHESENMHPNNEHNNMTKIISSGTNIRRHCFRIPRDSVEKLRQVFAVNELPPRSIREDLSKELGLDTEKVSKWFKNARYLALKSRKSNFVVLWNLQ 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4919g00027 546 ProSiteProfiles 'Homeobox' domain profile. 474 534 IPR001356 GO:0003677
Vium4919g00027 546 ProSiteProfiles Zinc finger PHD-type profile. 220 277 IPR019787 -
Vium4919g00027 546 SUPERFAMILY Homeodomain-like 470 530 IPR009057 -
Vium4919g00027 546 CDD homeodomain 482 538 IPR001356 GO:0003677
Vium4919g00027 546 Gene3D - 474 541 - -
Vium4919g00027 546 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 4 538 - -
Vium4919g00027 546 SUPERFAMILY FYVE/PHD zinc finger 215 280 IPR011011 -
Vium4919g00027 546 SMART PHD_3 222 275 IPR001965 -
Vium4919g00027 546 CDD PHD_PRHA_like 222 274 IPR045876 -
Vium4919g00027 546 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 286 IPR013083 -
Vium4919g00027 546 MobiDBLite consensus disorder prediction 313 369 - -
Vium4919g00027 546 MobiDBLite consensus disorder prediction 94 113 - -
Vium4919g00027 546 MobiDBLite consensus disorder prediction 26 44 - -
Vium4919g00027 546 MobiDBLite consensus disorder prediction 1 132 - -
Vium4919g00027 546 MobiDBLite consensus disorder prediction 345 366 - -
Vium4919g00027 546 MobiDBLite consensus disorder prediction 1 16 - -
Vium4919g00027 546 MobiDBLite consensus disorder prediction 69 93 - -
Vium4919g00027 546 FunFam pathogenesis-related homeodomain protein 476 539 - -
Vium4919g00027 546 Pfam PHD-finger 222 277 IPR019787 -
Vium4919g00027 546 Pfam Homeodomain 485 529 IPR001356 GO:0003677
Vium4919g00027 546 ProSitePatterns Zinc finger PHD-type signature. 223 274 IPR019786 -
Vium4919g00027 546 SMART HOX_1 476 538 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4919g00027 Vium-Chr4919 148400 152898 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4919g00027 125 540 Homeobox Transcription Factor Family AT4G29940 53.647 4.76e-139 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Vium4919g00027 Homeodomain 6.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4919g00027 - - gmx:100817639 855.129