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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Vium4919g00027
ATGCGGGACAGTGTGAAGAAGTCAAACGACAAAGGATCTAAAAAATCTGGTCATTTGAAGGCACGTACAAAAGGGAAGAAGGATAAAGTGAAAGTGGAATCAAAATCTCACACAAAAAATGTTGGCACTGACGTATCAAAGAAGAGAGTTATCTCTTCCCTCAAGATCAAAGGACCTCGTAAGGATTCTTCAGATAAGAAATTGACTACTGGACAGAAATTGCCTTTGAAGAACAGAAAATCTTCACAGAAGCCATCCTCAAAGTTACCAGGCAAAAAAGCTTCTCTTAGCTCTAGAAAAGAGGGGAAAGATGCTGATGGGGAGGTAAAGCTTCAAAAAATGAAGAGAAAGAGAACAAAGAAAAGACAAAGGAATAACTTGGATCTTGATGATCCTTCACGCCTGCAGAGGAGAGCACGGTATCTTTTAATCAAAATGAAGCTAGAGCAGAACCTTATCGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAACGAGCAAGGAAGCAAATTTTAAAATGTAGACTTGGTATTCGTGATGCCATTCGCCAATTGGATTCCCTTGGTTCATTGAGTTGCATTGAAGATTCGGCAATTGCTCCAGGTGGATCTGGTTGTCAGGAACATATATTCTGTGCTAAGTGCAAAATGCGTGAAGAACCTCCACATAATGATGTTATACGATGCTATGGTACATGCAAGCGTGCGTTTCACCAAAAATGTGTGGACCCTTCTTTAGACACTGAAAATGTTCCTCCTGGAGGGCAGGACTGGTTTTGTAATTTTTGTGAATGCAAGATGGAAATACTGGAAGCTATGAATGCTCATCTTGGAACTCACTTCTCCTTGCACAGTGCTTGGCAGGATGTATTCAAAGAAGAGGCTGCTATCCCTGATGGTGAGACTACATTACTGAATCCTGTAGAAGAATGGCCGTCAGATGATTCTGAAGATGATGATTATGACCCAGAGAGGAAAGAAGACAGCCACAATATCAACATGGAAGGAACTAATGATAGTGCGTCTGATGATTTAAGCAGTTCTACCAGTCTGTGTTATTCTGATGATGAACATTCTCCAGTACATGGTGTCAGTCATGAATATCTTTTTGCCAATACCAGCATAGATTCTGATGAGTCTGAGGACAAAGCCTGTGGGCGTAGGCAGCGAAAAGCTGTTGACTACAAGAAGCTTTATGATGAAATGTTTGGGAAGGAAGCTCCTGCATATGAACAATTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTGTGATGCTGTTGATTCTCTTATGACGTTGCATGAAAGTGAGAATATGCACCCCAATAATGAGCACAACAACATGACAAAAATAATTTCTTCAGGCACAAATATCAGAAGGCATTGTTTTAGGATTCCACGTGATTCAGTTGAGAAGCTTCGCCAAGTTTTTGCTGTGAATGAACTTCCTCCAAGATCTATTAGAGAGGATCTTTCAAAAGAGCTAGGACTTGACACTGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTGGCGCTTAAAAGTAGAAAGTCAAATTTTGTAGTCCTTTGGAATTTGCAATGA
1641
0.4089
MRDSVKKSNDKGSKKSGHLKARTKGKKDKVKVESKSHTKNVGTDVSKKRVISSLKIKGPRKDSSDKKLTTGQKLPLKNRKSSQKPSSKLPGKKASLSSRKEGKDADGEVKLQKMKRKRTKKRQRNNLDLDDPSRLQRRARYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCRLGIRDAIRQLDSLGSLSCIEDSAIAPGGSGCQEHIFCAKCKMREEPPHNDVIRCYGTCKRAFHQKCVDPSLDTENVPPGGQDWFCNFCECKMEILEAMNAHLGTHFSLHSAWQDVFKEEAAIPDGETTLLNPVEEWPSDDSEDDDYDPERKEDSHNINMEGTNDSASDDLSSSTSLCYSDDEHSPVHGVSHEYLFANTSIDSDESEDKACGRRQRKAVDYKKLYDEMFGKEAPAYEQLSEDEDWGPGKRKRREKECDAVDSLMTLHESENMHPNNEHNNMTKIISSGTNIRRHCFRIPRDSVEKLRQVFAVNELPPRSIREDLSKELGLDTEKVSKWFKNARYLALKSRKSNFVVLWNLQ
546
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Vium4919g00027
546
ProSiteProfiles
'Homeobox' domain profile.
474
534
IPR001356
GO:0003677
Vium4919g00027
546
ProSiteProfiles
Zinc finger PHD-type profile.
220
277
IPR019787
-
Vium4919g00027
546
SUPERFAMILY
Homeodomain-like
470
530
IPR009057
-
Vium4919g00027
546
CDD
homeodomain
482
538
IPR001356
GO:0003677
Vium4919g00027
546
Gene3D
-
474
541
-
-
Vium4919g00027
546
PANTHER
POLYCOMB-LIKE TRANSCRIPTION FACTOR
4
538
-
-
Vium4919g00027
546
SUPERFAMILY
FYVE/PHD zinc finger
215
280
IPR011011
-
Vium4919g00027
546
SMART
PHD_3
222
275
IPR001965
-
Vium4919g00027
546
CDD
PHD_PRHA_like
222
274
IPR045876
-
Vium4919g00027
546
Gene3D
Zinc/RING finger domain, C3HC4 (zinc finger)
164
286
IPR013083
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Vium4919g00027
Vium-Chr4919
148400
152898
Dispersed/Tandem
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Vium4919g00027
125
540
Homeobox Transcription Factor Family
AT4G29940
53.647
4.76e-139
419
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Transcription factors information
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Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TF
HB-PHD
Vium4919g00027
Homeodomain
6.8e-08
CL0123
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Vium4919g00027
-
-
gmx:100817639
855.129
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