Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4919g00025 ATGCGGGACAGTGTGAAGAAGTCAAACGACAAAGGATCTAAAAAATCTGGTCATTTGAAGGCACGTACAAAAGGGAAGAAGGATAAAGTGAAAGTGGAATCAAAATCTCACACAAAAAATGTTGGCACTGACGTATCAAAGAAGAGAGTTATCTCTTCCCTCAAGATCAAAGGACCTCGTAAGGATTCTTCAGATAAGAAATTGACTACTGGACAGAAATTGCCTTTGAAGAACAGAAAATCTTCACAGAAGCCATCCTCAAAGTTACCAGGCAAAAAAGCTTCTCTTAGCTCTAGAAAAGAGGGGAAAGATGCTGATGGGGAGGTAAAGCTTCAAAAAATGAAGAGAAAGAGAACAAAGAAAAGACAAAGGAATAACTTGGATCTTGATGATCCTTCACGCCTGCAGAGGAGAGCACGGTATCTTTTAATCAAAATGAAGCTAGAGCAGAACCTTATCGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAACGAGCAAGGAAGCAAATTTTAAAATGTAGACTTGGTATTCGTGATGCCATTCGCCAATTGGATTCCCTTGGTTCATTGAGTTGCATTGAAGATTCGGCAATTGCTCCAGGTGGATCTGGTTGTCAGGAACATATATTCTGTGCTAAGTGCAAAATGCGTGAAGAACCTCCACATAATGATGTTATACGATGCTATGGTACATGCAAGCGTGCGTTTCACCAAAAATGTGTGGACCCTTCTTTAGACACTGAAAATGTTCCTCCTGGAGGGCAGGACTGGTTTTGTAATTTTTGTGAATGCAAGATGGAAATACTGGAAGCTATGAATGCTCATCTTGGAACTCACTTCTCCTTGCACAGTGCTTGGCAGGATGTATTCAAAGAAGAGGCTGCTATCCCTGATGGTGAGACTACATTACTGAATCCTGTAGAAGAATGGCCGTCAGATGATTCTGAAGATGATGATTATGACCCAGAGAGGAAAGAAGACAGCCACAATATCAACATGGAAGGAACTAATGATAGTGCGTCTGATGATTTAAGCAGTTCTACCAGTCTGTGTTATTCTGATGATGAACATTCTCCAGTACATGGTGTCAGTCATGAATATCTTTTTGCCAATACCAGCATAGATTCTGATGAGTCTGAGGACAAAGCCTGTGGGCGTAGGCAGCGAAAAGCTGTTGACTACAAGAAGCTTTATGATGAAATGTTTGGGAAGGAAGCTCCTGCATATGAACAATTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTGTGATGCTGTTGATTCTCTTATGACGTTGCATGAAAGTGAGAATATGCACCCCAATAATGAGCACAACAACATGACAAAAATAATTTCTTCAGGCACAAATATCAGAAGGCATTGTTTTAGGATTCCACGTGATTCAGTTGAGAAGCTTCGCCAAGTTTTTGCTGTGAATGAACTTCCTCCAAGATCTATTAGAGAGGATCTTTCAAAAGAGCTAGGACTTGACACTGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTGGCGCTTAAAAGTAGAAAGCATCAAGCAGAAGGAGCAGCAAATCAACATAAGGGAATCACTTCCACAAAGAACTCCATATTACAAAATCAGGAGAAAACTGATCTTTTGAAACCAAAGACCTTGAAAATTACTACAAGTCATTCCCAGAAGGATGTTAAAAATGTCAGTGGAAGAAAGAAAATTAAGTTTTCTAGCAAGAAAAGACAACCAGAAATTCCTCCACCTCCTGGAGAAAATGGCAACAAGGACTCAATGGAGATGAGTGATGATGTGAGCTTGAAGAAACTATTGAAGAAAAAAAAGAAGAGGTTGGTAAATTTTACATTTGCAGGAGATTCTCAGACGGCAGAGTTGGAATTCGAAAGATTGTGCAAATTGAAGCAAAAACTAATTAGTATGAAGCAAAAATTAACAAGAATTCAAAGGTTGGATGCAAAGGGTTCAGATGAAGCCCATTGTAATGAAGCATCCATTGTATATGTACCCACAGCTGTGTTAAGGGAAAAAACTGAATGA 2106 0.3998 MRDSVKKSNDKGSKKSGHLKARTKGKKDKVKVESKSHTKNVGTDVSKKRVISSLKIKGPRKDSSDKKLTTGQKLPLKNRKSSQKPSSKLPGKKASLSSRKEGKDADGEVKLQKMKRKRTKKRQRNNLDLDDPSRLQRRARYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCRLGIRDAIRQLDSLGSLSCIEDSAIAPGGSGCQEHIFCAKCKMREEPPHNDVIRCYGTCKRAFHQKCVDPSLDTENVPPGGQDWFCNFCECKMEILEAMNAHLGTHFSLHSAWQDVFKEEAAIPDGETTLLNPVEEWPSDDSEDDDYDPERKEDSHNINMEGTNDSASDDLSSSTSLCYSDDEHSPVHGVSHEYLFANTSIDSDESEDKACGRRQRKAVDYKKLYDEMFGKEAPAYEQLSEDEDWGPGKRKRREKECDAVDSLMTLHESENMHPNNEHNNMTKIISSGTNIRRHCFRIPRDSVEKLRQVFAVNELPPRSIREDLSKELGLDTEKVSKWFKNARYLALKSRKHQAEGAANQHKGITSTKNSILQNQEKTDLLKPKTLKITTSHSQKDVKNVSGRKKIKFSSKKRQPEIPPPPGENGNKDSMEMSDDVSLKKLLKKKKKRLVNFTFAGDSQTAELEFERLCKLKQKLISMKQKLTRIQRLDAKGSDEAHCNEASIVYVPTAVLREKTE 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4919g00025 701 ProSiteProfiles 'Homeobox' domain profile. 474 534 IPR001356 GO:0003677
Vium4919g00025 701 ProSiteProfiles Zinc finger PHD-type profile. 220 277 IPR019787 -
Vium4919g00025 701 CDD homeodomain 482 538 IPR001356 GO:0003677
Vium4919g00025 701 SUPERFAMILY Homeodomain-like 477 540 IPR009057 -
Vium4919g00025 701 SMART PHD_3 222 275 IPR001965 -
Vium4919g00025 701 MobiDBLite consensus disorder prediction 535 618 - -
Vium4919g00025 701 Pfam Homeodomain 485 529 IPR001356 GO:0003677
Vium4919g00025 701 SUPERFAMILY FYVE/PHD zinc finger 215 280 IPR011011 -
Vium4919g00025 701 CDD PHD_PRHA_like 222 274 IPR045876 -
Vium4919g00025 701 MobiDBLite consensus disorder prediction 94 113 - -
Vium4919g00025 701 MobiDBLite consensus disorder prediction 313 369 - -
Vium4919g00025 701 MobiDBLite consensus disorder prediction 26 44 - -
Vium4919g00025 701 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 286 IPR013083 -
Vium4919g00025 701 MobiDBLite consensus disorder prediction 1 132 - -
Vium4919g00025 701 FunFam pathogenesis-related homeodomain protein 476 540 - -
Vium4919g00025 701 MobiDBLite consensus disorder prediction 544 581 - -
Vium4919g00025 701 MobiDBLite consensus disorder prediction 345 366 - -
Vium4919g00025 701 MobiDBLite consensus disorder prediction 1 16 - -
Vium4919g00025 701 Pfam PHD-finger 222 277 IPR019787 -
Vium4919g00025 701 MobiDBLite consensus disorder prediction 69 93 - -
Vium4919g00025 701 ProSitePatterns Zinc finger PHD-type signature. 223 274 IPR019786 -
Vium4919g00025 701 Gene3D - 476 543 - -
Vium4919g00025 701 SMART HOX_1 476 538 IPR001356 GO:0003677
Vium4919g00025 701 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 4 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4919g00025 Vium-Chr4919 147779 152897 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4919g00025 125 564 Homeobox Transcription Factor Family AT4G29940 51.327 3.49e-138 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Vium4919g00025 Homeodomain 9.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4919g00025 - - gmx:100817639 1057.36