Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4919g00024 ATGCGGGACAGTGTGAAGAAGTCAAACGACAAAGGATCTAAAAAATCTGGTCATTTGAAGGCACGTACAAAAGGGAAGAAGGATAAAGTGAAAGTGGAATCAAAATCTCACACAAAAAATGTTGGCACTGACGTATCAAAGAAGAGAGTTATCTCTTCCCTCAAGATCAAAGGACCTCGTAAGGATTCTTCAGATAAGAAATTGACTACTGGACAGAAATTGCCTTTGAAGAACAGAAAATCTTCACAGAAGCCATCCTCAAAGTTACCAGGCAAAAAAGCTTCTCTTAGCTCTAGAAAAGAGGGGAAAGATGCTGATGGGGAGGTAAAGCTTCAAAAAATGAAGAGAAAGAGAACAAAGAAAAGACAAAGGAATAACTTGGATCTTGATGATCCTTCACGCCTGCAGAGGAGAGCACGGTATCTTTTAATCAAAATGAAGCTAGAGCAGAACCTTATCGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAACGAGCAAGGAAGCAAATTTTAAAATGTAGACTTGGTATTCGTGATGCCATTCGCCAATTGGATTCCCTTGGTTCATTGAGTTGCATTGAAGATTCGGCAATTGCTCCAGGTGGATCTGGTTGTCAGGAACATATATTCTGTGCTAAGTGCAAAATGCGTGAAGAACCTCCACATAATGATGTTATACGATGCTATGGTACATGCAAGCGTGCGTTTCACCAAAAATGTGTGGACCCTTCTTTAGACACTGAAAATGGGCAGGACTGGTTTTGTAATTTTTGTGAATGCAAGATGGAAATACTGGAAGCTATGAATGCTCATCTTGGAACTCACTTCTCCTTGCACAGTGCTTGGCAGGATGTATTCAAAGAAGAGGCTGCTATCCCTGATGGTGAGACTACATTACTGAATCCTGTAGAAGAATGGCCGTCAGATGATTCTGAAGATGATGATTATGACCCAGAGAGGAAAGAAGACAGCCACAATATCAACATGGAAGGAACTAATGATAGTGCGTCTGATGATTTAAGCAGTTCTACCAGTCTGTGTTATTCTGATGATGAACATTCTCCAGTACATGGTGTCAGTCATGAATATCTTTTTGCCAATACCAGCATAGATTCTGATGAGTCTGAGGACAAAGCCTGTGGGCGTAGGCAGCGAAAAGCTGTTGACTACAAGAAGCTTTATGATGAAATGTTTGGGAAGGAAGCTCCTGCATATGAACAATTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTGTGATGCTGTTGATTCTCTTATGACGTTGCATGAAAGTGAGAATATGCACCCCAATAATGAGCACAACAACATGACAAAAATAATTTCTTCAGGCACAAATATCAGAAGGCATTGTTTTAGGATTCCACGTGATTCAGTTGAGAAGCTTCGCCAAGTTTTTGCTGTGAATGAACTTCCTCCAAGATCTATTAGAGAGGATCTTTCAAAAGAGCTAGGACTTGACACTGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTGGCGCTTAAAAGTAGAAAGCATCAAGCAGAAGGAGCAGCAAATCAACATAAGGGAATCACTTCCACAAAGAACTCCATATTACAAAATCAGGAGAAAACTGATCTTTTGAAACCAAAGACCTTGAAAATTACTACAAGTCATTCCCAGAAGGATGTTAAAAATGTCAGTGGAAGAAAGAAAATTAAGTTTTCTAGCAAGAAAAGACAACCAGAAATTCCTCCACCTCCTGGAGAAAATGGCAACAAGGACTCAATGGAGATGAGTGATGATGTGAGCTTGAAGAAACTATTGAAGAAAAAAAAGAAGAGGTTGGTAAATTTTACATTTGCAGGAGATTCTCAGACGGCAGAGTTGGAATTCGAAAGATTGTGCAAATTGAAGCAAAAACTAATTAGTATGAAGCAAAAATTAACAAGAATTCAAAGGTTGGATGCAAAGGGTTCAGATGAAGCCCATTGTAATGAAGCATCCATTGTATATGTACCCACAGCTGTGTTAAGGGAAAAAACTGAATGA 2094 0.3988 MRDSVKKSNDKGSKKSGHLKARTKGKKDKVKVESKSHTKNVGTDVSKKRVISSLKIKGPRKDSSDKKLTTGQKLPLKNRKSSQKPSSKLPGKKASLSSRKEGKDADGEVKLQKMKRKRTKKRQRNNLDLDDPSRLQRRARYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCRLGIRDAIRQLDSLGSLSCIEDSAIAPGGSGCQEHIFCAKCKMREEPPHNDVIRCYGTCKRAFHQKCVDPSLDTENGQDWFCNFCECKMEILEAMNAHLGTHFSLHSAWQDVFKEEAAIPDGETTLLNPVEEWPSDDSEDDDYDPERKEDSHNINMEGTNDSASDDLSSSTSLCYSDDEHSPVHGVSHEYLFANTSIDSDESEDKACGRRQRKAVDYKKLYDEMFGKEAPAYEQLSEDEDWGPGKRKRREKECDAVDSLMTLHESENMHPNNEHNNMTKIISSGTNIRRHCFRIPRDSVEKLRQVFAVNELPPRSIREDLSKELGLDTEKVSKWFKNARYLALKSRKHQAEGAANQHKGITSTKNSILQNQEKTDLLKPKTLKITTSHSQKDVKNVSGRKKIKFSSKKRQPEIPPPPGENGNKDSMEMSDDVSLKKLLKKKKKRLVNFTFAGDSQTAELEFERLCKLKQKLISMKQKLTRIQRLDAKGSDEAHCNEASIVYVPTAVLREKTE 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4919g00024 697 CDD homeodomain 478 534 IPR001356 GO:0003677
Vium4919g00024 697 Gene3D - 472 539 - -
Vium4919g00024 697 ProSiteProfiles 'Homeobox' domain profile. 470 530 IPR001356 GO:0003677
Vium4919g00024 697 Pfam PHD-finger 222 273 IPR019787 -
Vium4919g00024 697 SUPERFAMILY Homeodomain-like 473 536 IPR009057 -
Vium4919g00024 697 MobiDBLite consensus disorder prediction 531 614 - -
Vium4919g00024 697 SMART HOX_1 472 534 IPR001356 GO:0003677
Vium4919g00024 697 FunFam pathogenesis-related homeodomain protein 472 536 - -
Vium4919g00024 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 282 IPR013083 -
Vium4919g00024 697 MobiDBLite consensus disorder prediction 94 113 - -
Vium4919g00024 697 MobiDBLite consensus disorder prediction 309 365 - -
Vium4919g00024 697 SMART PHD_3 222 271 IPR001965 -
Vium4919g00024 697 MobiDBLite consensus disorder prediction 26 44 - -
Vium4919g00024 697 Pfam Homeodomain 481 525 IPR001356 GO:0003677
Vium4919g00024 697 MobiDBLite consensus disorder prediction 1 132 - -
Vium4919g00024 697 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 4 695 - -
Vium4919g00024 697 MobiDBLite consensus disorder prediction 540 577 - -
Vium4919g00024 697 MobiDBLite consensus disorder prediction 1 16 - -
Vium4919g00024 697 MobiDBLite consensus disorder prediction 341 362 - -
Vium4919g00024 697 MobiDBLite consensus disorder prediction 69 93 - -
Vium4919g00024 697 SUPERFAMILY FYVE/PHD zinc finger 215 276 IPR011011 -
Vium4919g00024 697 ProSitePatterns Zinc finger PHD-type signature. 223 270 IPR019786 -
Vium4919g00024 697 ProSiteProfiles Zinc finger PHD-type profile. 220 273 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4919g00024 Vium-Chr4919 147779 152897 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4919g00024 125 560 Homeobox Transcription Factor Family AT4G29940 50.664 3.19e-132 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Vium4919g00024 Homeodomain 9.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4919g00024 - - gmx:100817639 1042.72