Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4919g00017 ATGTCTTCGTGTTTGACCGGAGCTGGAGGAAGAACCTACGGATTCGATTTCGAATTTGTTAAATCTCCGTCTTCCTCGACCAGAACCTCACACACCTCTTCTTCGCCTTCTTCAACAATCTCCGAATCGAGCAATTCGGCTGCGCTCGCAATCTCCACCAAGAAACCCAGAACGCCGAGAAAGCGACCGAACCAAACCTACAATGAAGCAGCGGCACTTCTATCCACGGCCTACCCGAACCTCTTCTCTACAAAGAACCTCAAAACGCAGGGGAAATTCGCAAAGCCCGCATCGGAGAATTTCGATTTTGACTCTTCGGAGCTGTTTTTGCCGTTCAGGGTTTTGGACGGATCGTCTTCGTGTTTCCTTCTGGACCAACCGGGCCCCAAGCCCGTGGAGAGGCCCAAAGTGGTGAGCGTGCAGGAGAAGGCGTGTGGGAGCCCCGGGGAGATAAGCTCCGTAGTGAATTTCAATTACCTGGAATTGAACGACGATTGCGAAGAGAGCCTCGACGCGGAATCGATTCTCGACGAGGAAATTGAAGAAGGAATCGACAGCATCATGGGGAGCAGGGTCCAAGAAATCTCCAACGACGCCGTCAATAACTTTCCCTGGATAATGCCTTTTGGCGGGAAATCGGACTTCCCCAGACCCCGTGTCAGCGCTCTCCGACACGTCGACAACGGAAACTGGTGGAATTTTCCGGCCGTCGATATTCATCAGATATCTCCCAAAATTAACACCAAGCCTCCTCCGGTGACCGCCGAGAAGAAGATGAAGAAGAAGAAGGTGACGGCGATTGCGGCGGCCGAGAAACCGGCCGTGGTGGAGTTGAAGAACGCGGAATTGCCCAAACCGAAACAAGGTTTGATGTTGAAATTGAATTACGACGACGTTCGGGGCGCTTGGTCCGACCGTGGGACCCCGTTCGCGGACGATAGCCCCCTGGCCGACTTGCCGGAAACTGACGTCACTGCGCGGCTGTCGCAAATTGATTTGTGGTGGGACAATGGCGGAGTGAGAGAAGCTAGCGTGCAGCGCTACAAAGAGAAGCGGCGAACGCGACTGTTCTCGAAGAAGATCAGATACCAGGTGAGGAAGGTCAACGCAGATCGACGGCCCAGAATGAAGGGGCGATTTGTTAGGAGGCTCAATTCTAGCTCAAATGCACACAGATGA 1179 0.5344 MSSCLTGAGGRTYGFDFEFVKSPSSSTRTSHTSSSPSSTISESSNSAALAISTKKPRTPRKRPNQTYNEAAALLSTAYPNLFSTKNLKTQGKFAKPASENFDFDSSELFLPFRVLDGSSSCFLLDQPGPKPVERPKVVSVQEKACGSPGEISSVVNFNYLELNDDCEESLDAESILDEEIEEGIDSIMGSRVQEISNDAVNNFPWIMPFGGKSDFPRPRVSALRHVDNGNWWNFPAVDIHQISPKINTKPPPVTAEKKMKKKKVTAIAAAEKPAVVELKNAELPKPKQGLMLKLNYDDVRGAWSDRGTPFADDSPLADLPETDVTARLSQIDLWWDNGGVREASVQRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRLNSSSNAHR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4919g00017 392 MobiDBLite consensus disorder prediction 22 64 - -
Vium4919g00017 392 Pfam CCT motif 341 382 IPR010402 GO:0005515
Vium4919g00017 392 ProSiteProfiles CCT domain profile. 341 383 IPR010402 GO:0005515
Vium4919g00017 392 MobiDBLite consensus disorder prediction 22 52 - -
Vium4919g00017 392 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4919g00017 Vium-Chr4919 124536 128068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4919g00017 258 383 C2C2-CO-like Transcription Factor Family AT1G25440 40.789 1.02e-21 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium4919g00017 CCT 5.2e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4919g00017 - - gmx:100810303 628.632