Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4919g00012 ATGGACAATATGGGTGGGGAGTACAACCATTTCTGGGACACCTTCTTCCAAAACCAAGAGCTTGATAGCTGGGCAATGGATGAGGCGGCGATGTCCGGGTACTATGATTCAAGCTCTCCGGACGGTGGTGCTTCATCGATGGCATCAAAGAACATTGTTTCGGAGAGGAATAGGAGGAAGAAGCTGAACGAAAGGCTCTTTGCGCTTAGAGCCGTGGTCCCCAACATCAGTAAGATGGACAAGGCTTCTATCATTAAGGATGCTATTGAATACATCGAGCACTTGCATGAGCAAGAGAAGAGAATCGAAGCAGAGATTTTGGATCTGGAATCTGGGAAGCTCAAGAACCCAACCTATGAATTTGATCACGACCTGCCTATTCTCCTCAGGTCTAAGAAGAAGAGAACGGAAAATTCCCCAATTGAAGTAATCGAGCTGAGGGTTGCATACATGGGAGACAAGACGTTTGTGGTGAGCTTGACATGTAGTAAAAGGATAGACACAATGGTAAAACTGTGTGAGGTCTTCGAATCTTTAAAGCTGAAGATCATTGCAGCCAATATCACTTCTTTTTCAGGAACACTTTTGAAGACAGTCTTCATTGAGGCTGATGAAGAAGAGAAAGATGTTTTGCAGATAAAAATTCAGACAGCAATTTCAGCTCTGAATGGTCCTCAAAGCCCTATGAGTATCTGA 696 0.4411 MDNMGGEYNHFWDTFFQNQELDSWAMDEAAMSGYYDSSSPDGGASSMASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIEHLHEQEKRIEAEILDLESGKLKNPTYEFDHDLPILLRSKKKRTENSPIEVIELRVAYMGDKTFVVSLTCSKRIDTMVKLCEVFESLKLKIIAANITSFSGTLLKTVFIEADEEEKDVLQIKIQTAISALNGPQSPMSI 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4919g00012 231 SMART finulus 52 101 IPR011598 GO:0046983
Vium4919g00012 231 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 109 IPR036638 GO:0046983
Vium4919g00012 231 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 43 113 - -
Vium4919g00012 231 Gene3D - 44 112 IPR036638 GO:0046983
Vium4919g00012 231 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Vium4919g00012 231 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 38 216 - -
Vium4919g00012 231 Pfam Helix-loop-helix DNA-binding domain 53 96 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4919g00012 Vium-Chr4919 61359 67499 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4919g00012 2 202 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 59.906 3.86e-81 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium4919g00012 HLH 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4919g00012 - - gmx:100803916 342.043