Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4913g00015 ATGGCGGCATCATCTTCCTCAGCATCACTCTTTGGCTTTAGAGAAGAGGATCAAAACCAGATGAAGCAACAGCATTCCTTGACACCATCTTCGTCTGCAACACCAGCTGCACCACCACCCCAGAAGAAAAAGAGAAACCAACCTGGAACTCCATATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGCGAAGTGTGCAATAAAGGGTTTCAAAGGGAGCAAAATCTACAGCTTCACAGAAGAGGACACAATCTGCCATGGAAGCTGAAGCAGAAGAGCAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGCATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAAGCCCATTCTAAGACTTGTGGCACCAGAGAATACAGATGTGATTGTGGTACACTCTTCTCCAGGAGGGACAGTTTCATCACCCACAGGGCCTTCTGCGATGCACTTGCTCAAGAGAGTGCAAGACATCCACCAAACCTTGGCGCCGCCATCGGCACCCACCTCTTCGGAACCACCGCCAACACCATTCCTCTAAACCTTTCTCAGGTTGCTTCTCACATTTCCAACATCCAAGACCCCAACACCCAGCCAACAGAACTCCTCCGCCTCGGTGGCGCCGCCGCAAGAACCTCCCAATTCGACCATCTCCTAGGTTCTCCCTTCAGACCCTCCCAACAACAACCACCCTACTTTATGGAACCTAACCAAAACTACCACCCCGACCAACAACAACAACAAGGGCTGCTCCAAAACAAACCCTTCCAACAAGGACTGATGCAGATCCCCGATCATCTCAGCAACAGCAACTCACCCTTCAACCTTCCTTTCCTTTCAAACACCACCAACAATGCTTCCTTCACTGAAAACTTCAACAATACCAACAACAGCAGCAACAACAACGAGAGCGCTAACTTCTTCACAACTTCAAGCGCTCCCTCTCTCTTCAGCAACAACAACAACAACGCTGTCAGTGCAAACGCCAACGCCAGTGCACTATCTCACATGTCCGCAACTGCACTGCTTCAGAAAGCCGCACAAATGGGTGCGTCTTCGAGCAACAGCACAGCTTCGCTGTTGAAAAGCTTCGGAAGCGCGTCCTCCAGCAGCGGCTCAAAATCCGAGCAACACAGGCCACTGGTGAACGCTGCAAACTACGGCGGCGGAATCTTCGGAGGGAACGTGAACGAACAGGGTAACAGCAACCTTCAAGACCTGATGAACTCGTTCGCTGTTGGTGGAAACTCTTCCATTTTTGAAGGTGGGTTTGAAGCGTATGATCATAACAGTAATAATAACAACAGGGAGGGAAAAGTGCATGCAATGAGTGGAAGCAGTAGCATTGGGGGGTCCGATAGACTCACCCGCGATTTTCTGGGTGTGGGTCAGATTGTTAGAGGCATGAGTGGGAGTGGAGGAGTTGCACAGAGAGAACAGCAGCAACAACAGCATGGCTTCAACTTGAGTTCTTTGGAAGCAGATCAACGAAATAACAGTAACAGCAATAATAATAACAATGCTGCGCCGTCAGGTCAAGCTTTTGGGGGTGGTGGAGGGAATTTTCAGTGA 1713 0.4939 MAASSSSASLFGFREEDQNQMKQQHSLTPSSSATPAAPPPQKKKRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPNLGAAIGTHLFGTTANTIPLNLSQVASHISNIQDPNTQPTELLRLGGAAARTSQFDHLLGSPFRPSQQQPPYFMEPNQNYHPDQQQQQGLLQNKPFQQGLMQIPDHLSNSNSPFNLPFLSNTTNNASFTENFNNTNNSSNNNESANFFTTSSAPSLFSNNNNNAVSANANASALSHMSATALLQKAAQMGASSSNSTASLLKSFGSASSSSGSKSEQHRPLVNAANYGGGIFGGNVNEQGNSNLQDLMNSFAVGGNSSIFEGGFEAYDHNSNNNNREGKVHAMSGSSSIGGSDRLTRDFLGVGQIVRGMSGSGGVAQREQQQQQHGFNLSSLEADQRNNSNSNNNNNAAPSGQAFGGGGGNFQ 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4913g00015 570 Gene3D Classic Zinc Finger 125 204 - -
Vium4913g00015 570 SMART c2h2final6 112 142 IPR013087 -
Vium4913g00015 570 SMART c2h2final6 71 93 IPR013087 -
Vium4913g00015 570 SMART c2h2final6 147 167 IPR013087 -
Vium4913g00015 570 MobiDBLite consensus disorder prediction 541 570 - -
Vium4913g00015 570 MobiDBLite consensus disorder prediction 477 497 - -
Vium4913g00015 570 MobiDBLite consensus disorder prediction 1 32 - -
Vium4913g00015 570 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Vium4913g00015 570 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 532 IPR031140 -
Vium4913g00015 570 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Vium4913g00015 570 MobiDBLite consensus disorder prediction 541 559 - -
Vium4913g00015 570 FunFam protein indeterminate-domain 12-like 50 118 - -
Vium4913g00015 570 Gene3D Classic Zinc Finger 54 119 - -
Vium4913g00015 570 MobiDBLite consensus disorder prediction 1 55 - -
Vium4913g00015 570 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Vium4913g00015 570 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Vium4913g00015 570 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4913g00015 Vium-Chr4913 96431 102702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4913g00015 41 521 IDZ Gene Family AT2G02070 49.632 4.80e-133 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium4913g00015 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4913g00015 K25870 - gmx:100799389 767.689