Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4913g00013 ATGGAGCTTTCTGCCTTCCCCACCTTCAAAGCAGTTTCTAATGCTTCCTTAATTCTATTTTCTTCTAATCAACTCTGCAGCCGCTGCTCCTTTCCTCTTCGTCGCGGCGATTATGGCTTCTCTTGGATTCCCGAGCCAAAACTGTTTGTTCGGATCAAGATGTGTTCGGAGAAGAAATGTTCGTCGTCGAACGGTTACGGTGGAACCGAAAACGGAGAAACGAAACCTGATTTCGTCGAAGTCATAGGCATTGGTTCTAGGAAGGACGCTATTTTTGATTTCTGCTTGAGCGCGCCGTTTCAGTTGCCTTTGCTGCGGTTTTGGAGTATCCTTATGACAGAATCAGAAGAAGTGCATTTACAACAAAGATCAATTGAAGAAGAATCTCATCCAAGAGTTGTCAAAGCTCCCATATTTTTGAAGTCATGCTCACAGGCTATTGTTCTTGTGGCCAGTGCAGGATATGGCTTGTACCACACTGTTGCAGCTGATATTTTTGAAACTGTAAGGTCCAGGAATGGATTAACAGTGGCTATAGTTTTGAAGCCATTTAGATTTGAAGGGCTTAGACGCCAAAACGAGGTGAAGGCCTTGATGCAGAAACTTAAGGAGAACACAAACTTACTTATTGAAATTGATATTGATGCACTGCTTGAGAAAGACTTGTTGACACTAGATGAGGCCATGAAGACTGCTAATGATGCAGTTTTGCTTGCTATTAAGGCTGTCTCTGTTCTGAAGTCTGAGATGCACAGAAAATTTATAGACAGATTGAACGGTGGGATGAAAGAGGCCAGTCTTTCAGAAATTAATAAAATGTTAGAATCCTATAAAGAAGCAGGGATTGGATTTGGAGCCGCTGCTAACATAAAAGCTTCAATTTTGCAGTCTATATTCGATAGTCCTTTCCTGGGTGCTCGATTGAAGGATCCAAATAGCATAGTTATATGCACTCTTGCCTGTTCAGGACCCATCAGTGATAGTGATATAGAAATCTTTCTACGTACTTTCCGTCAAACAACAAATTACACAAAAGATATTATAATATCAGCAATACATGACCCTACTGTTGAGCCCAACCTACTCATAACGACAGTGCTTACACTTGGCTGTTTAAATGTGGAACGGTCTTCCCAGAATGGTGGTATACTATCCAGACTTGCCATGCATTTTCCTCTTATTTTTAGCTTTTGGGGAAGACATAGTCAGCAACAAGTTGGCACTGGGAAACAGACTGAAGTATTTCTGCCAGAAATGATGAGTTCTGATGATGTTGATGAGAAGACAAATCAGATCGCTTCAGATGGCATAGATAGCAATCTTGATAAAAACTATGAGGAGTTGGAGCCAACAATGAGCAACAATTCCAAGTTTCCTGCTTCAAGGGATTCAGGAAAAAGTGAAGATTTATTTGACACCTCTTCCAACTATAACATCCTCTATGACTCTATTACTGAAGGAGTTGCATTAGGTGACTCTGCTTTTCAAAGGGAGCAACTTGAGAACTGGAATTTAGGTCCCGGATTTGAGGTGGCAAAGAAATGGGCCCAGGAAAAAGCTGCTGATGCTACACCAATTGTTGATAATCTAAGCATCTTCCACCTTCCTGTTGGCGTGAGGCCTTCAGAAGAATTGAAAGAAAGACTAGAAATCTCATTTATGACAAAACAGCATGAGCCTGATACTGATAATGTTGTGAAAGCACAATCATTTAATGGAGGTACGTCTTCTTGGAGTGCAGTGACTGATGCTAGCTTGGAAGCAGTTATGGAATTTGCATCTTCACTTTTGAAAGGAAAGAATGCTAATAAATCAAAGACACATGGAGTACTATCTGTTCGTGCTGCGTCTATGTTGGAGGCAGAACGTGATTTCTCAAAAAAGTGGAGTCCAGTGGTGGAAATGCAATATCGGGGAGGAAGATACAAGGGACGATGCCAAGGAGGTCTACCTGAAGGAAAGGGGCGCCTTGTTCTCAGAGATGGGAGCATATATGATGGCTTATGGCGGTATGGTAAGAGATCGGGTCCCGGTACATTATATTTCAAAAACGGAGATATGTTTCAAGGATTATGGAGAGATGATGTCATACACGGCAAGGGTTGGTTTTATTTTCACACTGGTGATCGCTGGTTTGCAAACTTTTGGAAGGGAAAAGCTAATGGTGAGGGACGATTCTACACAAAGTCCGGTGATGCCTTCTTTGGCAATTTCAAAGATGGGTGGCGACATGGCCAGTTTCTCTGTATTAATGCAAACGGGACAAGGTACACTGAAATTTGGGATCATGGTGTTCGTGTAGATAGCAAGCATTTGGACAGATGA 2325 0.4194 MELSAFPTFKAVSNASLILFSSNQLCSRCSFPLRRGDYGFSWIPEPKLFVRIKMCSEKKCSSSNGYGGTENGETKPDFVEVIGIGSRKDAIFDFCLSAPFQLPLLRFWSILMTESEEVHLQQRSIEEESHPRVVKAPIFLKSCSQAIVLVASAGYGLYHTVAADIFETVRSRNGLTVAIVLKPFRFEGLRRQNEVKALMQKLKENTNLLIEIDIDALLEKDLLTLDEAMKTANDAVLLAIKAVSVLKSEMHRKFIDRLNGGMKEASLSEINKMLESYKEAGIGFGAAANIKASILQSIFDSPFLGARLKDPNSIVICTLACSGPISDSDIEIFLRTFRQTTNYTKDIIISAIHDPTVEPNLLITTVLTLGCLNVERSSQNGGILSRLAMHFPLIFSFWGRHSQQQVGTGKQTEVFLPEMMSSDDVDEKTNQIASDGIDSNLDKNYEELEPTMSNNSKFPASRDSGKSEDLFDTSSNYNILYDSITEGVALGDSAFQREQLENWNLGPGFEVAKKWAQEKAADATPIVDNLSIFHLPVGVRPSEELKERLEISFMTKQHEPDTDNVVKAQSFNGGTSSWSAVTDASLEAVMEFASSLLKGKNANKSKTHGVLSVRAASMLEAERDFSKKWSPVVEMQYRGGRYKGRCQGGLPEGKGRLVLRDGSIYDGLWRYGKRSGPGTLYFKNGDMFQGLWRDDVIHGKGWFYFHTGDRWFANFWKGKANGEGRFYTKSGDAFFGNFKDGWRHGQFLCINANGTRYTEIWDHGVRVDSKHLDR 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4913g00013 774 PANTHER RADIAL SPOKE HEAD 1 HOMOLOG 116 770 - -
Vium4913g00013 774 SMART morn 663 684 IPR003409 -
Vium4913g00013 774 SMART morn 732 753 IPR003409 -
Vium4913g00013 774 SMART morn 686 707 IPR003409 -
Vium4913g00013 774 SMART morn 640 661 IPR003409 -
Vium4913g00013 774 Gene3D - 713 772 - -
Vium4913g00013 774 Pfam MORN repeat 735 746 IPR003409 -
Vium4913g00013 774 Pfam MORN repeat 688 710 IPR003409 -
Vium4913g00013 774 Pfam MORN repeat 647 663 IPR003409 -
Vium4913g00013 774 Pfam MORN repeat 665 687 IPR003409 -
Vium4913g00013 774 Gene3D Tubulin/FtsZ, GTPase domain 116 369 IPR036525 -
Vium4913g00013 774 PRINTS Cell division protein FtsZ signature 268 289 IPR003008 GO:0005525
Vium4913g00013 774 PRINTS Cell division protein FtsZ signature 174 195 IPR003008 GO:0005525
Vium4913g00013 774 SUPERFAMILY Tubulin nucleotide-binding domain-like 81 244 IPR036525 -
Vium4913g00013 774 Gene3D - 644 701 - -
Vium4913g00013 774 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 639 767 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4913g00013 Vium-Chr4913 63785 74575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4913g00013 77 773 PP2C-type Phosphatase Gene Family AT1G75010 47.937 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4913g00013 - - gsj:114371951 1310.05