Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4913g00012 ATGGAGCTTTCTGCCTTCCCCACCTTCAAAGCAGTTTCTAATGCTTCCTTAATTCTATTTTCTTCTAATCAACTCTGCAGCCGCTGCTCCTTTCCTCTTCGTCGCGGCGATTATGGCTTCTCTTGGATTCCCGAGCCAAAACTGTTTGTTCGGATCAAGATGTGTTCGGAGAAGAAATGTTCGTCGTCGAACGGTTACGGTGGAACCGAAAACGGAGAAACGAAACCTGATTTCGTCGAAGTCATAGGCATTGGTTCTAGGAAGGACGCTATTTTTGATTTCTGCTTGAGCGCGCCGTTTCAGTTGCCTTTGCTGCGGTTTTGGAGTATCCTTATGACAGAATCAGAAGAAGTGCATTTACAACAAAGATCAATTGAAGAAGAATCTCATCCAAGAGTTGTCAAAGCTCCCATATTTTTGAAGTCATGCTCACAGGCTATTGTTCTTGTGGCCAGTGCAGGATATGGCTTGTACCACACTGTTGCAGCTGATATTTTTGAAACTGTAAGGTCCAGGAATGGATTAACAGTGGCTATAGTTTTGAAGCCATTTAGATTTGAAGGGCTTAGACGCCAAAACGAGGTGAAGGCCTTGATGCAGAAACTTAAGGAGAACACAAACTTACTTATTGAAATTGATATTGATGCACTGCTTGAGAAAGACTTGTTGACACTAGATGAGGCCATGAAGACTGCTAATGATGCAGTTTTGCTTGCTATTAAGGCTGTCTCTGTTCTGAAGTCTGAGATGCACAGAAAATTTATAGACAGATTGAACGGTGGGATGAAAGAGGCCAGTCTTTCAGAAATTAATAAAATGTTAGAATCCTATAAAGAAGCAGGGATTGGATTTGGAGCCGCTGCTAACATAAAAGCTTCAATTTTGCAGTCTATATTCGATAGTCCTTTCCTGGGTGCTCGATTGAAGGATCCAAATAGCATAGTTATATGCACTCTTGCCTGTTCAGGACCCATCAGTGATAGTGATATAGAAATCTTTCTACGTACTTTCCGTCAAACAACAAATTACACAAAAGATATTATAATATCAGCAATACATGACCCTACTGTTGAGCCCAACCTACTCATAACGACAGTGCTTACACTTGGCTGTTTAAATGTGGAACGGTCTTCCCAGAATGGTGGTATACTATCCAGACTTGCCATGCATTTTCCTCTTATTTTTAGCTTTTGGGGAAGACATAGTCAGCAACAAGTTGGCACTGGGAAACAGACTGAAGTATTTCTGCCAGAAATGATGAGTTCTGATGATGTTGATGAGAAGACAAATCAGATCGCTTCAGATGGCATAGATAGCAATCTTGATAAAAACTATGAGGAGTTGGAGCCAACAATGAGCAACAATTCCAAGTTTCCTGCTTCAAGGGATTCAGGAAAAAGTGAAGATTTATTTGACACCTCTTCCAACTATAACATCCTCTATGACTCTATTACTGAAGGAGGTGACTCTGCTTTTCAAAGGGAGCAACTTGAGAACTGGAATTTAGGTCCCGGATTTGAGGTGGCAAAGAAATGGGCCCAGGAAAAAGCTGCTGATGCTACACCAATTGTTGATAATCTAAGCATCTTCCACCTTCCTGTTGGCGTGAGGCCTTCAGAAGAATTGAAAGAAAGACTAGAAATCTCATTTATGACAAAACAGCATGAGCCTGATACTGATAATGTTGTGAAAGCACAATCATTTAATGGAGGTACGTCTTCTTGGAGTGCAGTGACTGATGCTAGCTTGGAAGCAGTTATGGAATTTGCATCTTCACTTTTGAAAGGAAAGAATGCTAATAAATCAAAGACACATGGAGTACTATCTGTTCGTGCTGCGTCTATGTTGGAGGCAGAACGTGATTTCTCAAAAAAGTGGAGTCCAGTGGTGGAAATGCAATATCGGGGAGGAAGATACAAGGGACGATGCCAAGGAGGTCTACCTGAAGGAAAGGGGCGCCTTGTTCTCAGAGATGGGAGCATATATGATGGCTTATGGCGGTATGGTAAGAGATCGGGTCCCGGTACATTATATTTCAAAAACGGAGATATGTTTCAAGGATTATGGAGAGATGATGTCATACACGGCAAGGGTTGGTTTTATTTTCACACTGGTGATCGCTGGTTTGCAAACTTTTGGAAGGGAAAAGCTAATGGTGAGGGACGATTCTACACAAAGTCCGGTGATGCCTTCTTTGGCAATTTCAAAGATGGGTGGCGACATGGCCAGTTTCTCTGTATTAATGCAAACGGGACAAGGTACACTGAAATTTGGGATCATGGTGTTCGTGTAGATAGCAAGCATTTGGACAGATGA 2316 0.4197 MELSAFPTFKAVSNASLILFSSNQLCSRCSFPLRRGDYGFSWIPEPKLFVRIKMCSEKKCSSSNGYGGTENGETKPDFVEVIGIGSRKDAIFDFCLSAPFQLPLLRFWSILMTESEEVHLQQRSIEEESHPRVVKAPIFLKSCSQAIVLVASAGYGLYHTVAADIFETVRSRNGLTVAIVLKPFRFEGLRRQNEVKALMQKLKENTNLLIEIDIDALLEKDLLTLDEAMKTANDAVLLAIKAVSVLKSEMHRKFIDRLNGGMKEASLSEINKMLESYKEAGIGFGAAANIKASILQSIFDSPFLGARLKDPNSIVICTLACSGPISDSDIEIFLRTFRQTTNYTKDIIISAIHDPTVEPNLLITTVLTLGCLNVERSSQNGGILSRLAMHFPLIFSFWGRHSQQQVGTGKQTEVFLPEMMSSDDVDEKTNQIASDGIDSNLDKNYEELEPTMSNNSKFPASRDSGKSEDLFDTSSNYNILYDSITEGGDSAFQREQLENWNLGPGFEVAKKWAQEKAADATPIVDNLSIFHLPVGVRPSEELKERLEISFMTKQHEPDTDNVVKAQSFNGGTSSWSAVTDASLEAVMEFASSLLKGKNANKSKTHGVLSVRAASMLEAERDFSKKWSPVVEMQYRGGRYKGRCQGGLPEGKGRLVLRDGSIYDGLWRYGKRSGPGTLYFKNGDMFQGLWRDDVIHGKGWFYFHTGDRWFANFWKGKANGEGRFYTKSGDAFFGNFKDGWRHGQFLCINANGTRYTEIWDHGVRVDSKHLDR 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4913g00012 771 PANTHER RADIAL SPOKE HEAD 1 HOMOLOG 116 767 - -
Vium4913g00012 771 SMART morn 637 658 IPR003409 -
Vium4913g00012 771 SMART morn 660 681 IPR003409 -
Vium4913g00012 771 SMART morn 729 750 IPR003409 -
Vium4913g00012 771 SMART morn 683 704 IPR003409 -
Vium4913g00012 771 Gene3D - 641 698 - -
Vium4913g00012 771 PRINTS Cell division protein FtsZ signature 268 289 IPR003008 GO:0005525
Vium4913g00012 771 PRINTS Cell division protein FtsZ signature 174 195 IPR003008 GO:0005525
Vium4913g00012 771 Gene3D - 710 769 - -
Vium4913g00012 771 Gene3D Tubulin/FtsZ, GTPase domain 116 369 IPR036525 -
Vium4913g00012 771 SUPERFAMILY Tubulin nucleotide-binding domain-like 81 244 IPR036525 -
Vium4913g00012 771 Pfam MORN repeat 662 684 IPR003409 -
Vium4913g00012 771 Pfam MORN repeat 732 743 IPR003409 -
Vium4913g00012 771 Pfam MORN repeat 644 660 IPR003409 -
Vium4913g00012 771 Pfam MORN repeat 685 707 IPR003409 -
Vium4913g00012 771 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 636 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4913g00012 Vium-Chr4913 63785 74575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4913g00012 77 770 PP2C-type Phosphatase Gene Family AT1G75010 48.000 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4913g00012 - - gsj:114371951 1300.03