Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4903g00005 ATGGAGAGAACCATTAGGTGGTTGAAGGGATTGTTTGGGAGAAAGACAGACAGAGCGCGCAAAGAAAATTCAAATCCTGACTCCAAATGGTGTCACTCAGACAGAGATTCCAGAGGTTTATGTCATAATCCTACCACCATTCCTCCCAATATTTCACCTGCTGAAGCTGCTTGGCTACAATCCTTCTACTCAGAAACTGAGAAGGAGCAGAACAAGCATGCCATTGCAGTTGCGGTGGCCACTGCAGCAGCGGCTAATGCGGCGGTGGCTGCTGCTCAGGCTGCTGTAGCAGTGGTTAGGTTAACCAGCCATGACAATGGCAGAGACACTATGTTTGATGGTGGACAAGAAAAGTTGGCTGTTGTCAAGATTCAAACTGTGTTTAGAGGATACTTGGCAAGGAAGGCATTGAGAGCTTTAAAAGGATTGGTGAAGTTACAAGCACTAGTGAGAGGGTACTTAGTGCGGAAGCAAGCGGCAGCAACCCTACTCAGCATGCAGGCTCTAATTAGAGCTCAAGCTACAGTAAGATCTAAGAAATCTCAGGGATTCATGAGCACAAAGAATGAAACACACAGGTTTCAAACACAAGCACGAAAATCCATGGAGAGATTTGAAGACATACAGAGTGAGTACATAGCTCCCATCCACAGCAGAAGGCTGTCATCTTCCTTTGATGCCACAATGAATAATGCAAACAACAGTGTTGATGGGAGCCCCAAAATAGTTGAAGTGGACACTGGTAGGCCAAAGTCAAGGTCTCGCAGGAGCAACACATCAATGTCAGATTTTGGTGATGACCCATCATTTCAAACACTTCCTTCTTCTCTCCCATTCACTCATTTATCCATACCGAACCACAGGACTTTTCTGGACTCAGAGTGGGGCTTAACAGGAGAAGAGTGCAGATTTTCAACAGCACAAAGCACTCCACGCTTCACCACCAACTCTTGTAGTTGTGGCTCTCTTGTTGTTGCCCCTATGACACCTAAAAGTGTTTGCAACGAAAACTTCTTCTATGGGCAGTACCACAATTTTCCAAACTACATGGCCAGCACTCAGTCTTTCAAGGCTAAATTGAGGTCTCATAGTGCTCCGAAGCAGCGTCCAGATCCTGGTTCAAAGAAGAGACTTACCCTCGATGAGATGATGGAGTCCAGGAGCATTTTAAGTGGGACTAGAATGCAAAGGTCTTGCTCACAGATTCAGGAAGCAATTAATTTTAAGAATGCTGTGATGAGTAAGCTTCAGAAATCCACAGAATTTGGTAGGGAGACAACACCAACTTTTCCAACCAGAGGAGGTGGCGATTGGTGA 1317 0.4556 MERTIRWLKGLFGRKTDRARKENSNPDSKWCHSDRDSRGLCHNPTTIPPNISPAEAAWLQSFYSETEKEQNKHAIAVAVATAAAANAAVAAAQAAVAVVRLTSHDNGRDTMFDGGQEKLAVVKIQTVFRGYLARKALRALKGLVKLQALVRGYLVRKQAAATLLSMQALIRAQATVRSKKSQGFMSTKNETHRFQTQARKSMERFEDIQSEYIAPIHSRRLSSSFDATMNNANNSVDGSPKIVEVDTGRPKSRSRRSNTSMSDFGDDPSFQTLPSSLPFTHLSIPNHRTFLDSEWGLTGEECRFSTAQSTPRFTTNSCSCGSLVVAPMTPKSVCNENFFYGQYHNFPNYMASTQSFKAKLRSHSAPKQRPDPGSKKRLTLDEMMESRSILSGTRMQRSCSQIQEAINFKNAVMSKLQKSTEFGRETTPTFPTRGGGDW 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4903g00005 438 MobiDBLite consensus disorder prediction 17 37 - -
Vium4903g00005 438 MobiDBLite consensus disorder prediction 254 269 - -
Vium4903g00005 438 MobiDBLite consensus disorder prediction 231 269 - -
Vium4903g00005 438 ProSiteProfiles IQ motif profile. 141 168 IPR000048 GO:0005515
Vium4903g00005 438 PANTHER IQ-DOMAIN 5-RELATED 1 381 - -
Vium4903g00005 438 Pfam IQ calmodulin-binding motif 120 138 IPR000048 GO:0005515
Vium4903g00005 438 Pfam IQ calmodulin-binding motif 144 158 IPR000048 GO:0005515
Vium4903g00005 438 SMART iq_5 116 138 IPR000048 GO:0005515
Vium4903g00005 438 SMART iq_5 139 160 IPR000048 GO:0005515
Vium4903g00005 438 Gene3D - 115 163 - -
Vium4903g00005 438 ProSiteProfiles IQ motif profile. 117 145 IPR000048 GO:0005515
Vium4903g00005 438 Pfam Protein of unknown function (DUF4005) 311 394 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4903g00005 Vium-Chr4903 35394 38834 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4903g00005 1 395 IQD Protein Family AT3G16490 51.378 6.07e-94 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4903g00005 - - gmx:100800892 645.195