Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4903g00004 ATGTCAATTTTTCATTCCGTTTTCTATGGTTTAGTTCTAGTTATCATTCTTCTACAGAATCCCAGTTCAACACAATGCCATACCAAGGGAATCAGACCCAGGCCTGGGTATGGTTTATCTACCAACATGACCAGAGTTCAATTTTCAGAAGAACAGTTCATGAAATGGGTGCGATTTGTGGGTGGCCTCAAACATTCTGTCTTTAAGACAGCAAAGAATAAGCTTTTTCCTTCTCACACTCTGCATGTTTCTAAGAAGTCTGGCAAAGGAGGTTTTTCGTCAATTCAAGCAGCCATTGATTCCCTTCCATTCATCAATGTAGTGAGAGTGGTAATTAAGGTCCATGCAGGGGTTTATACGGAGAAAGTTAACATCCCTCCTTTGAAATCCTTCATAACAATACAAGGAGCTGGAGCGGATAACACCATTGTTCAATGGGGTGACAGTGCTCAAAGCCAGCCATCAGGAACCTACGGTTCTGCAACTTTTGCAGTGAATTCACCTTTTTTCGTAGCCAAGAATATCACATTCAAAAACACTGCCCCGATTCCAGCACCAGGAGCAGTAGGAAAGCAAGCGGTGGCATTAAGAATTTCAGCAGACAATGCAATATTCCTAGGCTGCAAATTCTTGGGAGCACAGGACACACTCTACGATCATCTGGGTAGGCATTACTATAAGGATTGTTATATCGAAGGCTCTGTCGATTTCATCTTTGGAAACGCTCTCTCTCTCTTTGAGGGATGTCACGTGCATGCAATAGCACAAGTTACAGGGGCCCTAACAGCCCAAGGAAGGAGCAGCTTATTACAGGACACGGGATTCTCGTTCGTTCACTGTAAGGTCACGGGCTCAGGAGCACTTTACCTTGGAAGGGCTTGGGGTCCCTTTTCTCGCGTTGTCTTTGCTTACACTTACATGGACAACATCATCATTCCCAAAGGATGGTATAACTGGGGTGACCCTAACCGTGAAATGACTGTGTTCTATGGACAGTACAAATGCACAGGAGCAGGAGCAAGGTACGCGGGGAGAGTATCATGGTCAAGGGAGCTCACTGATGAGGAAGCTAAGCCGTTTATTTCCCTTAGCTACATCGATGGCTCTGAATGGATCAATCTTTCTTTTTGA 1131 0.4465 MSIFHSVFYGLVLVIILLQNPSSTQCHTKGIRPRPGYGLSTNMTRVQFSEEQFMKWVRFVGGLKHSVFKTAKNKLFPSHTLHVSKKSGKGGFSSIQAAIDSLPFINVVRVVIKVHAGVYTEKVNIPPLKSFITIQGAGADNTIVQWGDSAQSQPSGTYGSATFAVNSPFFVAKNITFKNTAPIPAPGAVGKQAVALRISADNAIFLGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQVTGALTAQGRSSLLQDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGAGARYAGRVSWSRELTDEEAKPFISLSYIDGSEWINLSF 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4903g00004 376 FunFam Pectinesterase 77 374 - -
Vium4903g00004 376 Pfam Pectinesterase 85 368 IPR000070 GO:0030599|GO:0042545
Vium4903g00004 376 SUPERFAMILY Pectin lyase-like 77 374 IPR011050 -
Vium4903g00004 376 ProSitePatterns Pectinesterase signature 2. 231 240 IPR033131 -
Vium4903g00004 376 Gene3D - 78 375 IPR012334 -
Vium4903g00004 376 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 72 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4903g00004 Vium-Chr4903 30345 33459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4903g00004 86 375 Carbohydrate Esterase AT1G05310 48.658 1.19e-99 299