Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium48g00008 ATGTTGTTTCCTTTTCTTCCATGCATTTTGATTTGTTATGTTATAGTGACTGTCAAAAAAATTACAGTTGATGCTCTTAAGGAAATCACTAGCACGATGGGGGCCACCTATTGGGAGTTTGACAGTGATTCTTGTTCTGTTAAAATGCTGAGATCAACACCAGATCCACCTAAAGAATCTGAAAGGAAAATTGTTTGTGATTGCTCTATTGAAAACAACACCTGTCACGTAGTAGAGATCCTTTTCAAGAAGGTCAACCTTCCTGGCATGCTTCCACCTCAATTGGTTAAGCTTCCTTACCTCAGCAAAGTTGATTTTGCTTTCAACTACCTAAGTGGTACGATTCCAAAGGAATGGGGTTCGACAAATTTAACTTCAATCTCTGTATTTGCTAATCATTTGTCAGGGGAAATTCCTATAGAGTTGGGAAGAATTACCACTCTAACATACCTGAACCTTGAAGCAAACCAATTTTCCGGTGTTGTTCCCCACGAACTTGGAAGTCTATTTAAGCTGGAACTATTGGTTTTATCGTCCAATAATTTTTCTGGGAAGTTACCGGTGACACTTGCTAAGTTGCAGAATATGACAGAATTCAGGATAAGTGACAACAATTTTAGCGGAGAAATACCTAGCTTCTTCATACAGAATTGGAAATCACTTCAAAGATTAGACATGCTTGCAAGTGGACTGGAGGGACCTATCCCATCAAATATATCTCTTTTGAGTAATTTATATCAATTGAGGATTAGTGACATAAATGGTCCAAGTCAGAATTTTCCCAATTTAATCAACATGACACGAATGAAAATACTGATTTTGAGAAACTGCCATATTATTGGAGTTCTTCCTAACTACTTGTGGAGTATGGAGAAATTGGAGATGTTGGACGTGAGTTTCAATAAGTTGGTTGGGAAAATACCAGATGCTCGACATGCAGGGTATCTGAGATTTCTCTTCCTAACTCACAACATGCTAAGTGGTAATATTCCCAAGTCAGTCTTGGCGGATGGAAGCAGCGTTGATCTTTCTTACAACAATTTTACGTGGCAAGGACCAGATGAACCTGCTTGTAGAGATAACCTAAATTTAAACTTAAACTTGTTCCGGAGCTTCTACGGGACCAAATTACAGCAGATTCTTCCCTGTTTAGAGATCTCCAATTGTCCTGCATATTCACATTGTTTTCGTGTTAACTGTGGTGGAAAGGATATAAATGTGATGGAAAATGATGAAAATGTTCTCTATGTAGGAGATGGAGATGTGTTAGGTAGTGAAGCTGCTAAATATTATATTAATTATAAAAGTCACTGGGGATTTAGCAGCACTGGGGACTTCATGGATGATGGCAATTACCTAAATGCTCATTTTATTAGGGCTTTGACATCTTCAAATTTGCCTGAACTATATCAAACGGCACGTGTTGCTCCACTTTCGCTTACTTATTTTCTCTATTGCTTGGAAAATGGGAAATATACTGTAAAACTCCACTTCGCAGAAATACAATTTACAAACGATAAGACATACAGTAGTCTTGGGAAGCGCTTATTTGATATCTATATTCAGGAAAAATTAGTTAGGAAGGATTTTAATATTGAAGATGAAATTCATGGTTCTCAAAAACCACTTACTTTCCCATATAATGTCAGTGTAACAGAGAATATTCTGGAGATTCGATTCTATTGGGCTGGAAAGGGGACAACAAGGGTTCCTGGTGGTGGAGCTTATGGTCCCCTCATATCAGCACTCTCCATTGTTTCTCATTCCAAACCTTGTTCAGAACAAAAAAGTGCAAGGCGTATGATAATTGTTGGAGTTGGGTTTGGTGTCACCGCTCTGTGCCTTGTTATCATCATTGTTGGAATCTTTTGGTGGAATGGCTGCTTCAAAGGAATGATTAGGGCTGTAAAAGGTACTGAAAGACAAGATTCAAAAATGGGGACATTTACATTAGAACAAATTAGAGAGGCCACAGAGGATTTCAGTCCAGTTAACAAGATTGGAGAAGGTGGATTTGGTCCTGTATACAAGGGTCAATTATCTGATGGTACACTGGTAGCAGTCAAACAACTCTCATCAAAGTCACGACAGGGGAATCGTGAATTTTTAAATGAGATAGGCTTGGTATCTTGTTTGCAACACCCTAATCTTGTGAAACTTCATGGATGTTGCATTGAAGGGAATCAATTAATGTTGGTGTATGAGTACATGGAAAATAATAGCCTGGCTCAAGCTTTGTTCAGCTCAAAAGATCAACTTAATCTTGATTGGCCAACAAGGCTTAGGATCTGTATTGGCATAGCAAAAGGTCTTGCATTTCTTCACGAAGAATCAAGACTCAAGATTGTTCATCGAGACATCAAGGCTACTAATGTGTTACTGGATGGGAATTTAAACCCCAAAATATCTGACTTTGGGTTGGCTAGGCTTGATGATGAAGAGAAGACCCATATCACTACCCGAATAGCTGGAACAATAGGGTACATGGCACCCGAATATGCATTATGGGGTCGCTTGTCTTACAAGGCTGATGTTTACAGTTATGGGGTTGTGGTCTTGGAAGTTGTTAGTGGGAAGAGCAATAACAAGTACATGCCTAGTGATAATCGTGTTTGCCTTTTAGACAAGGCATGTCATCTACAGCGTACTGAAAGGTTAATAGAACTGGTGGATGAAAGGTTGGGATCAGAGATAAAACCAACAGAAGCAATAATTTTGATGAAAGTTGCTCTTCTGTGCACGGATGTATCACCTTCACTTAGGCCTACAATGTCTGAGGTTGTAAACATGCTCGAAGGAAGAGCAAGCATTCCAGATAAAATCCCACAGTCAAGTGACTTTAGTGAAGATATAAGGTTTAAACCCATGAGGGATATCTATCAGCAAAGGGAAAACCACAGTTTAAGTTCAAGCCTGTTAGACAATTCAACAGGAGTTCTCACACTTACCTCGCCCTAA 2958 0.3905 MLFPFLPCILICYVIVTVKKITVDALKEITSTMGATYWEFDSDSCSVKMLRSTPDPPKESERKIVCDCSIENNTCHVVEILFKKVNLPGMLPPQLVKLPYLSKVDFAFNYLSGTIPKEWGSTNLTSISVFANHLSGEIPIELGRITTLTYLNLEANQFSGVVPHELGSLFKLELLVLSSNNFSGKLPVTLAKLQNMTEFRISDNNFSGEIPSFFIQNWKSLQRLDMLASGLEGPIPSNISLLSNLYQLRISDINGPSQNFPNLINMTRMKILILRNCHIIGVLPNYLWSMEKLEMLDVSFNKLVGKIPDARHAGYLRFLFLTHNMLSGNIPKSVLADGSSVDLSYNNFTWQGPDEPACRDNLNLNLNLFRSFYGTKLQQILPCLEISNCPAYSHCFRVNCGGKDINVMENDENVLYVGDGDVLGSEAAKYYINYKSHWGFSSTGDFMDDGNYLNAHFIRALTSSNLPELYQTARVAPLSLTYFLYCLENGKYTVKLHFAEIQFTNDKTYSSLGKRLFDIYIQEKLVRKDFNIEDEIHGSQKPLTFPYNVSVTENILEIRFYWAGKGTTRVPGGGAYGPLISALSIVSHSKPCSEQKSARRMIIVGVGFGVTALCLVIIIVGIFWWNGCFKGMIRAVKGTERQDSKMGTFTLEQIREATEDFSPVNKIGEGGFGPVYKGQLSDGTLVAVKQLSSKSRQGNREFLNEIGLVSCLQHPNLVKLHGCCIEGNQLMLVYEYMENNSLAQALFSSKDQLNLDWPTRLRICIGIAKGLAFLHEESRLKIVHRDIKATNVLLDGNLNPKISDFGLARLDDEEKTHITTRIAGTIGYMAPEYALWGRLSYKADVYSYGVVVLEVVSGKSNNKYMPSDNRVCLLDKACHLQRTERLIELVDERLGSEIKPTEAIILMKVALLCTDVSPSLRPTMSEVVNMLEGRASIPDKIPQSSDFSEDIRFKPMRDIYQQRENHSLSSSLLDNSTGVLTLTSP 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium48g00008 985 SUPERFAMILY L domain-like 54 331 - -
Vium48g00008 985 ProSiteProfiles Protein kinase domain profile. 661 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium48g00008 985 CDD STKc_IRAK 667 933 - -
Vium48g00008 985 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 631 736 - -
Vium48g00008 985 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 393 588 - -
Vium48g00008 985 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 12 966 - -
Vium48g00008 985 Pfam Protein tyrosine and serine/threonine kinase 665 931 IPR001245 GO:0004672|GO:0006468
Vium48g00008 985 SMART serkin_6 661 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium48g00008 985 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 256 376 - -
Vium48g00008 985 SUPERFAMILY Protein kinase-like (PK-like) 646 932 IPR011009 -
Vium48g00008 985 Gene3D Phosphorylase Kinase; domain 1 631 736 - -
Vium48g00008 985 Gene3D Ribonuclease Inhibitor 187 255 IPR032675 -
Vium48g00008 985 Gene3D Ribonuclease Inhibitor 31 186 IPR032675 -
Vium48g00008 985 Gene3D Ribonuclease Inhibitor 256 361 IPR032675 -
Vium48g00008 985 Pfam Malectin domain 395 583 IPR021720 -
Vium48g00008 985 FunFam Putative LRR receptor-like serine/threonine-protein kinase 737 943 - -
Vium48g00008 985 Gene3D - 393 590 - -
Vium48g00008 985 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 24 186 - -
Vium48g00008 985 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 187 254 - -
Vium48g00008 985 Gene3D Transferase(Phosphotransferase) domain 1 737 946 - -
Vium48g00008 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium48g00008 Vium-Chr48 47489 58302 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium48g00008 2 826 Receptor kinase-like Gene Family AT1G29750 58.443 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium48g00008 PK_Tyr_Ser-Thr 2.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium48g00008 - - mtr:11406167 1370.14