Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium48g00006 ATGGATGTGTCCAGAATTAAGCTGATGACAGAGGCAGGGTTGTTATCCAATTCTATAACCAAGGTTTCTACTGATACTTTTATTGCTGATGAGGATCTGGACAGTAATTGTCTTGGGGAGGAAGTTGGTAGTGCAGCAGTCACACCTCCAGAAAAGGGAAGAGTAGAAGAAATTCCGATGTTGGGTATGGTGTCCCAAAATATAAACTCTTTGGTTGTCGGTGAAGAAGTTTTAACCCCAGAAATTGAGGATGATGATTTGATATCGCTAGAAGGTGATCCAATTATTGATAGTTCTCTTTCAGTAGCCAGCGAGAATAGTAGTTTTTGTGGAGATGAGTTCATCGGTTCTGAGATTTCTGCAGATTTAGGAACAAGAAGTTCCATAGAAATAGAGAAAAGCATCAACACTGTGAAAATTGCTGCCAGGGCTACTGATTTGGGTGTGTCAAATGTAGTCGCAGATGTAGCAGTTAGCGTTGGAGAAGAGACAGGAGTTATATCTGTCCCAGAGCCTACTACAGGTGTTCTTCATCAACTAACTCTAGAAAGATCTGTGAGTGGAACAGTTGGTAGAAGTGTTTTTGAATTAGATTGTACCCCACTTTGGGGATTTACATCTGTGTGTGGAAAAAGACCTGAGATGGAAGATGCACTTGCAACTGTACCTAGATTTTTGAAAATTCCTATTCAAATGCTAACCGGTGATAGGGTACCTGATGGCATAGACCAATGTTTCAGGGAGCAGACAATACATTTCTTTGGAGTCTATGATGGCCATGGTGGTTCTCAGGTGGCAAATTATTGCCGCGAGCGCATGCATTTAGCCTTGGCAGAGGAAATAGAATCTGTCAGAGAAGGTCTTTTAGTTGAAAGCACCAGGGATGATTGTCGAGATCTGTGGAAAAAAGCCTTCACCAGTTGCTTTTTAAAGGTTGATTCTGAAGTTGGAGGGGATGTTAATACTGATCCTGTTGCCCCAGAAACTGTTGGATCAACTGCTGTTGTTGCTGTTATATGTTCATCTCATATTGTAGTTTCAAACTGTGGTGATTCAAGAGCGGTTCTGTGTCGTGGCAAAGAACCCATGGCCCTATCAGTTGACCATAAACCAAATCGACCTGATGAATATGCAAGAATTGAGGCAGCTGGAGGCAGGGTGATACAATGGAATGGTCACCGAGTTTTTGGTGTTCTCGCAATGTCAAGGTCAATTGGTGATAGGTATTTGAAGCCATGGATTATTCCAGACCCTGAGGTGATGTTTGTTCCTCGTGCCAAAGACGATGACTGCCTCATTCTGGCCAGTGACGGCCTGTGGGATGTCATGACAAACGAAGAGGTGTGCGACATTGCTCGGCGGCGCATACTTCTCTGGCACAAGAAAAATGGGCTGCCACTGCCCTCAGAACGGGGAGAAGGAATTGATCCTGCTGCACAAGCAGCTGCAGAGTACCTCTCAAATCGCGCCCTTCAGAAAGGAAGCAAAGACAACATCTCTGTGATTGTGGTGGATTTGAAAGCTCAGAGAAAATTTAAGAGCAAGACGTGA 1551 0.4391 MDVSRIKLMTEAGLLSNSITKVSTDTFIADEDLDSNCLGEEVGSAAVTPPEKGRVEEIPMLGMVSQNINSLVVGEEVLTPEIEDDDLISLEGDPIIDSSLSVASENSSFCGDEFIGSEISADLGTRSSIEIEKSINTVKIAARATDLGVSNVVADVAVSVGEETGVISVPEPTTGVLHQLTLERSVSGTVGRSVFELDCTPLWGFTSVCGKRPEMEDALATVPRFLKIPIQMLTGDRVPDGIDQCFREQTIHFFGVYDGHGGSQVANYCRERMHLALAEEIESVREGLLVESTRDDCRDLWKKAFTSCFLKVDSEVGGDVNTDPVAPETVGSTAVVAVICSSHIVVSNCGDSRAVLCRGKEPMALSVDHKPNRPDEYARIEAAGGRVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKDDDCLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLPLPSERGEGIDPAAQAAAEYLSNRALQKGSKDNISVIVVDLKAQRKFKSKT 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium48g00006 516 SMART PP2C_4 192 504 IPR001932 -
Vium48g00006 516 Pfam Protein phosphatase 2C 232 499 IPR001932 -
Vium48g00006 516 FunFam Protein phosphatase 2C 16 190 516 - -
Vium48g00006 516 ProSiteProfiles PPM-type phosphatase domain profile. 202 506 IPR001932 -
Vium48g00006 516 ProSitePatterns PPM-type phosphatase domain signature. 253 261 IPR000222 GO:0043169
Vium48g00006 516 SUPERFAMILY PP2C-like 198 507 IPR036457 -
Vium48g00006 516 Gene3D - 189 516 IPR036457 -
Vium48g00006 516 CDD PP2Cc 204 506 IPR001932 -
Vium48g00006 516 PANTHER PROTEIN PHOSPHATASE 155 506 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium48g00006 Vium-Chr48 31308 34952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium48g00006 149 516 PP2C-type Phosphatase Gene Family AT1G17550 60.000 6.49e-158 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium48g00006 K14497 - gmx:102662702 873.618