Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium48g00002 ATGGACGAGGATTCAACAACAAACCACGAGGTGGTATTAGATGTAAACAAGGATGTCTCTAGAACAACTGAAGACTCACGCTCCTTTCTCAATGTTTCTTTCTTGCAAAAGTTGGTGGCTGAGGTGGTGGGCACGTATTTCTTGATATTCGCAGGGTGTGCTGCAGTGGTTGTAAACAAGAACAACGACAACGTGGTAACACTTCCTGGGATATCAATTGTTTGGGGACTAGTCGTGATGGTGCTGGTTTACTCGGTTGGCCACATCTCTGGTGCCCATTTCAATCCTGCTGTCACCATTGCCTTTGCCTCAACCAAAAGGTTTCCCTGGAAGCAGGTACCAGTTTATGTAGTAGCACAGGTTGTTGGATCCACACTTGCAAGTGGGACTCTCAGACTAATATTCAGTGGCAATGAGAACCAGTTTTCAGGAACACTTCCATCTGGGACTCACGCCCAAGCTTTTGCGGTTGAATTCATTATCACGTTTTTCCTTATGTTTGTCATATCTGGGGTGGCCACCGATAACAGAGCGATCGGTGAGTTGGCTGGGATTGCCGTTGGGGCCACTGTGCTGTTGAATGTGTTGTTTGCAGGACCAATCACAGGAGCATCAATGAACCCAGCAAGAAGCTTAGGCCCTGCATTAGTGCACAACGAATTCAAAGGAATATGGATATATTTAGTGTCTCCAACATCTGGGGCTGTGGTTGGTGCATGGGTTTATAACAGTATTCGTTACACAGATAAGCCACTGCGTGAGATCACCCAAAGTGCCTCTTTCCTCAAAGGAAAAGGGCATAGTGGTGGCTCTAGATGA 819 0.4664 MDEDSTTNHEVVLDVNKDVSRTTEDSRSFLNVSFLQKLVAEVVGTYFLIFAGCAAVVVNKNNDNVVTLPGISIVWGLVVMVLVYSVGHISGAHFNPAVTIAFASTKRFPWKQVPVYVVAQVVGSTLASGTLRLIFSGNENQFSGTLPSGTHAQAFAVEFIITFFLMFVISGVATDNRAIGELAGIAVGATVLLNVLFAGPITGASMNPARSLGPALVHNEFKGIWIYLVSPTSGAVVGAWVYNSIRYTDKPLREITQSASFLKGKGHSGGSR 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium48g00002 272 ProSitePatterns MIP family signature. 93 101 IPR022357 -
Vium48g00002 272 Gene3D Glycerol uptake facilitator protein. 1 258 IPR023271 -
Vium48g00002 272 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium48g00002 272 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium48g00002 272 PRINTS Major intrinsic protein family signature 225 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium48g00002 272 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium48g00002 272 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium48g00002 272 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium48g00002 272 CDD MIP 36 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium48g00002 272 PANTHER AQUAPORIN NIP2-1 20 262 IPR034294 -
Vium48g00002 272 SUPERFAMILY Aquaporin-like 29 256 IPR023271 -
Vium48g00002 272 Pfam Major intrinsic protein 31 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium48g00002 272 NCBIfam MIP family channel protein 40 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium48g00002 Vium-Chr48 11140 13374 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium48g00002 32 271 Major Intrinsic Protein MIP AT5G37810 61.157 2.08e-106 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium48g00002 K09874 - gmx:100794883 450.669