Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium48g00001 ATGGCTGATTATTCAGGAGGATCTGAAACACACGAGGTAGTTGTCAATGTAACCAAGGACACCCCAAAAACAGTGGAACGCTCCGACTCCTTTGTCTCTGTTCCTTTCTTGCAGAAGTTGATAGCCGAGGTGGTGGGCACATATTTCTTGATATTCGCAGGATGTGGTTCGGTTGTGGTGAACAAGAACAACAACAACGTGGTAACACTTCCTGGGATAGCAATTGTATGGGGGCTGGTTGTGACAGTGCTGGTTTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAACCCTGCTGTCACCATTGCCTTTGCTTCCACCAAAAGGTTTCCCTTGACGCAGGTACCAGCTTATGTTGCAGCTCAACTGCTAGGAGGCACACTTGCAAGTGGAACTCTGAAGCTGTTGTTTATGGGAAAGCATGACCAGTTTTCAGGAACACTTCCAAGTGGAACTGATCTGCAAGCTTTTGTGTTTGAATTCATAATCACATTTCTCCTTATGTTTGTCATATCAGGGGTTGCCACTGATAACAGAGCGATTGGTGAGTTGGCTGGGATTGCAATTGGGTCTACAATACTGCTGAACGTGATCATTGGAGGGCCAGTGACAGGAGCATCAATGAACCCAGCAAGAAGCTTAGGCCCTGCATTAGTGCACAACGAATTCAAAGGAATATGGATATATTTAGTGTCTCCAACATCTGGGGCTGTGGTTGGTGCATGGGTTTATAACAGTATTCGTTACACAGATAAGCCACTGCGTGAGATCACCAAGAGTGCCTCTTTTCTCAAAGGACGTACTGCTGGCACCAAATAG 819 0.4628 MADYSGGSETHEVVVNVTKDTPKTVERSDSFVSVPFLQKLIAEVVGTYFLIFAGCGSVVVNKNNNNVVTLPGIAIVWGLVVTVLVYSVGHISGAHFNPAVTIAFASTKRFPLTQVPAYVAAQLLGGTLASGTLKLLFMGKHDQFSGTLPSGTDLQAFVFEFIITFLLMFVISGVATDNRAIGELAGIAIGSTILLNVIIGGPVTGASMNPARSLGPALVHNEFKGIWIYLVSPTSGAVVGAWVYNSIRYTDKPLREITKSASFLKGRTAGTK 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium48g00001 272 PANTHER AQUAPORIN NIP2-1 29 264 IPR034294 -
Vium48g00001 272 Pfam Major intrinsic protein 32 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium48g00001 272 Gene3D Glycerol uptake facilitator protein. 5 258 IPR023271 -
Vium48g00001 272 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium48g00001 272 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium48g00001 272 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium48g00001 272 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium48g00001 272 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium48g00001 272 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium48g00001 272 CDD MIP 38 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium48g00001 272 SUPERFAMILY Aquaporin-like 32 258 IPR023271 -
Vium48g00001 272 NCBIfam MIP family channel protein 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium48g00001 272 ProSitePatterns MIP family signature. 95 103 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium48g00001 Vium-Chr48 2639 4713 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium48g00001 34 272 Major Intrinsic Protein MIP AT5G37810 60.251 2.05e-102 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium48g00001 K09874 - gmx:100813448 462.996