Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium489g00041 ATGGGGTTCTGGGGGATTGAAGTCAAACCTGGAAAACCGTGTCCTTATCACTCTGACAATGTGCGAGGGAAACTGCACGTTACTCAGGCTACTCTAGGCATTGGCTCGTCGAAGGATAAAAGCATTCTTCAGTGCGCTTCTGGACACAAAAGTCCAGTTTTCTTGTGTTCATTGCTACCAAACAGAATTGAGTCATGCCCTTTGAATCTTAAGTTTGACATTGATGACTTAGTTGCATTCTCTGTGATTGGTTCACGAAGCATCCACCTTTCTGGTTTTTTCGCAGCTGATGATGGAGATGAGCTTAAGGATGACTATGAATATGATTCATGGGGGGAAGACATTGAAGGAACTGATACAACTGAATCATCTGAATATGATAGTGAAGATGAATATGATAATGGCTTTATTGTTGATAGTGATGTTGATATATACCGGTCTTCACCAGTCAGAAATAGTGGAGTTGTAATTGAAGAAATAGTGGATGATGAAAAACCTGAAACTGGAGATGATCAAAATAAGCAATTAAAGAAAAAGAAACAGGTAGCTAAGTTGAAACCAAAAGACAGCAAAATTTTCAAGTCTGAAATTGTTGCTAAGGGTGAGACTGACCTTGTGGAAAATGAAGATGAAGATGAAGATGGTTTTCCAATTTCCACTGCTGAGAAAGATGTCCCTATCTCTCAGAAGGCAGATGGAGAAATGAAAGGAGAACAAGCACTTAAGAAAATTGAGAATGCCAACAAGAAGAGAAAAGATGTCGATCATTCTGCTAGAGTTAAACGGAAGGTTGACAGTGCTGATGAAGTTGAGCCACAGGATGGGAAAAAAAAGAAAAGAAATAAGTTAAAGGAACGTATTAAAGAGGAAAATGCTGATGCATCTGGCAATAGCAATGAGACAAATGTTACTGCCCCAGATGAAAAGCATCCAGAGGCTGTCAAAACTACAACCAGCCAGAGTGATGTTTCTCATGCAAAGGATGAAAATGAGGGAAAATTGTCCAATAACGAGGTCGGTGCTGAGAAAAAAAACAAGAAAAAAAGGAAGAAAAAGACCAAGGAGTTAGAAGGGGTAGCTGCTGCAGATCAAATTACTTCAAGTGCTGAAAAGCAGAATTTGCCTGTTGCCTCAGAGAAAAAGGGGAAGAAACAAACTGAGACTAAGCCATCTCAAGTGAGAACTTTTCCGAACGGATTGGTTATAGAGGAGCTCCTTATGGGTAAACCTGATGGCAAAAGAGCTGCTCCAGGAAAAAAGGTTAGTGTTAAATATATTGGCAAGCTGCAAAAGGATGGGAAAATATTTGACTCAAATGTAGGAAGAGCACCCTTTAAATTTCGCCTGGGTGTAGGCCAAGTCATCAAAGGGTGGGAGGTTGGGATCAATGGGATGAGGATCGGGGACAAAAGAAGGATCACAATTCCACCATCTATGGGATACGCAGATAAGCGCGTTGGGACTATACCACCAAATGCGTGGCTTGTATTTGATGTTGAGTTGGTTGATGTTGATCGTTAA 1521 0.4063 MGFWGIEVKPGKPCPYHSDNVRGKLHVTQATLGIGSSKDKSILQCASGHKSPVFLCSLLPNRIESCPLNLKFDIDDLVAFSVIGSRSIHLSGFFAADDGDELKDDYEYDSWGEDIEGTDTTESSEYDSEDEYDNGFIVDSDVDIYRSSPVRNSGVVIEEIVDDEKPETGDDQNKQLKKKKQVAKLKPKDSKIFKSEIVAKGETDLVENEDEDEDGFPISTAEKDVPISQKADGEMKGEQALKKIENANKKRKDVDHSARVKRKVDSADEVEPQDGKKKKRNKLKERIKEENADASGNSNETNVTAPDEKHPEAVKTTTSQSDVSHAKDENEGKLSNNEVGAEKKNKKKRKKKTKELEGVAAADQITSSAEKQNLPVASEKKGKKQTETKPSQVRTFPNGLVIEELLMGKPDGKRAAPGKKVSVKYIGKLQKDGKIFDSNVGRAPFKFRLGVGQVIKGWEVGINGMRIGDKRRITIPPSMGYADKRVGTIPPNAWLVFDVELVDVDR 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium489g00041 506 MobiDBLite consensus disorder prediction 227 293 - -
Vium489g00041 506 Gene3D - 358 506 IPR046357 GO:0003755
Vium489g00041 506 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 413 502 IPR001179 GO:0003755
Vium489g00041 506 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 505 - -
Vium489g00041 506 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Vium489g00041 506 SUPERFAMILY FKBP-like 391 504 - -
Vium489g00041 506 PIRSF FK506-bp_FPR3 245 505 IPR023566 GO:0003755
Vium489g00041 506 PIRSF FK506-bp_FPR3 1 53 IPR023566 GO:0003755
Vium489g00041 506 PIRSF FK506-bp_FPR3 49 260 IPR023566 GO:0003755
Vium489g00041 506 MobiDBLite consensus disorder prediction 199 391 - -
Vium489g00041 506 MobiDBLite consensus disorder prediction 111 132 - -
Vium489g00041 506 FunFam Peptidyl-prolyl cis-trans isomerase 393 506 - -
Vium489g00041 506 Coils Coil 273 293 - -
Vium489g00041 506 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 418 505 IPR001179 GO:0003755
Vium489g00041 506 Gene3D Nucleoplasmin core domain 1 100 - -
Vium489g00041 506 MobiDBLite consensus disorder prediction 322 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium489g00041 Vium-Chr489 310136 314507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium489g00041 418 502 Calmodulin-binding Proteins AT5G48570 51.724 4.94e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium489g00041 K14826 - gmx:100792856 779.245