Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium489g00039 ATGGACATGCCACCCAGTTCAACCCATGTTGGTGCTGCGTCTTCTGCATACAGAGGAGTCCGCAAGAGAAAATGGGGCAAGTGGGTCTCCGAAATCCGCGAGCCGGGAACCAAGACGCGAATTTGGCTCGGAAGTTTCGAGACGCCGGAGATGGCCGCCGCCGCCTACGACGTGGCGGCGTTGCATTTCCGCGGCCGCGACGCCAGGCTCAACTTCCCCGAGCTCGCAAGCACGCTGCCACGCCCCGTCAGCAACAATGCCGACCACATACGCATGGCGGCGCACGAGGCGGCCCTGAGGCTCCGAACCAACCCCGCCCCGCCGGAGACTGAGATAGGAGGCGGTTCCTCGACGGCGCCGCCGCTGACAGTGAGACTCTCCCCCACTCAGATTCAGGCCATCAATGACTGCCCCATGGACTCCCCTCAGACATGGATGCAAATGCCGGACACTTTCATGATGCACGATCAATCCATGATGTTCGCAAATGGTTATGCCTTTGAAGACAACGAGTGGGAGGATATGCAGAATGATTCTCTCTGGGATCCTTAG 552 0.5978 MDMPPSSTHVGAASSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGRDARLNFPELASTLPRPVSNNADHIRMAAHEAALRLRTNPAPPETEIGGGSSTAPPLTVRLSPTQIQAINDCPMDSPQTWMQMPDTFMMHDQSMMFANGYAFEDNEWEDMQNDSLWDP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium489g00039 183 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Vium489g00039 183 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Vium489g00039 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 159 - -
Vium489g00039 183 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Vium489g00039 183 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Vium489g00039 183 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Vium489g00039 183 Pfam AP2 domain 16 65 IPR001471 GO:0003700|GO:0006355
Vium489g00039 183 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Vium489g00039 183 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Vium489g00039 183 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium489g00039 Vium-Chr489 305261 306960 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium489g00039 15 183 AP2-EREBP Transcription Factor Family AT1G71450 61.628 3.53e-65 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium489g00039 AP2 3.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium489g00039 - - gmx:100815719 343.199