Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium489g00038 ATGGATCAGGAGCCAACAAGCACCATGCAACAATGTGGAATAGCCCCAACGGCAACATCGTATCGTGGTGTTCGACAACGAAAATGGGGCAAATGGGTGTCGGAAATTCGCGAGCCGGGGAAGAAAAGCAGAATATGGTTGGGGAGCTACGAGTCGCCGGAGATGGCAGCAGCAGCTTATGACGTGGCGGCGTTGCACCTCAGAGGACGCACCGCCAGACTCAATTTTCCTGAACTGGCGGAGACACTGCCACGTCCCGCCAGCTCCAAGTCCGAGGATGTGCAGGTGGCAGCACAACAAGCGGCATTGAGGTTCAGTAGGTCACCGACGATGTCGCATAATGAGATATGTGTGAGTGAAAGTAGTGACAGAAACAGTAACAACAGAAAGAGTAACAGTAAGAAGAAGAAGAGTGAGAATAGTGGTGTTGTTCCTCTGCAAGTGGGGCTTTCGGCTACACAGATTCAAGCTATAAATGAGTCTCCGTTGGAGTCACCGAAGATGTGGATGATGCAAATGGCAGAGACGCTTAGGTTTGGGTTTGGTGATGAGTATTCTATGATGATGGTGTCATGTGATGGTGATGATGATTATGCCATGGAGTTGAGTGGATGGGAAGAAATGCATCATGAATCCTTATGGGACTCTCCATAA 654 0.4954 MDQEPTSTMQQCGIAPTATSYRGVRQRKWGKWVSEIREPGKKSRIWLGSYESPEMAAAAYDVAALHLRGRTARLNFPELAETLPRPASSKSEDVQVAAQQAALRFSRSPTMSHNEICVSESSDRNSNNRKSNSKKKKSENSGVVPLQVGLSATQIQAINESPLESPKMWMMQMAETLRFGFGDEYSMMMVSCDGDDDYAMELSGWEEMHHESLWDSP 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium489g00038 217 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Vium489g00038 217 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Vium489g00038 217 Gene3D AP2/ERF domain 20 78 IPR036955 GO:0003700|GO:0006355
Vium489g00038 217 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Vium489g00038 217 CDD AP2 21 79 IPR001471 GO:0003700|GO:0006355
Vium489g00038 217 MobiDBLite consensus disorder prediction 116 143 - -
Vium489g00038 217 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Vium489g00038 217 PRINTS Ethylene responsive element binding protein signature 59 79 IPR001471 GO:0003700|GO:0006355
Vium489g00038 217 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Vium489g00038 217 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Vium489g00038 217 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium489g00038 Vium-Chr489 286833 287522 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium489g00038 19 215 AP2-EREBP Transcription Factor Family AT1G71450 45.685 4.34e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium489g00038 AP2 4.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium489g00038 - - vra:106777427 398.282