Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium489g00012 ATGGATGAGGGAAAGCATAAATCGAGGAAAGAAATTCACGAGTTGAAGGATGGAGATTCTAAGAGGAGTCACCGCGACCGTGACCGTGACCGTGATAGAACTGGAGAAAGGGGTAAGGATAAAAACGATGGGAGGCACAGGGATAGGGAGAAGAGAGATCGTGAGTCCCGAAGACATGAAAGAGAGAGGAGTACTGATTCTGAAGACAAGCATGATAGAGACAGGGAGAAACGAAAAGATAAAGATAAGGATGTGGATAGGGAAAGAGGTCGAGAGAAGAAAAGGGAAAGGGACAGGGACAGGGATGACAGGGAGAGGACAGACAGAGTAAGGGAAAAGGAGAAAGAGAGGGAAAAAAAAGAGGATAAGGAGAGGATCCGAGAGAGGGAAAGGGAAAGGAGGGATCATGAGAGAGAGAAAGAAAAGGAAAGAGAAAGGGTGAGGAGAGCACGAGAGAGGGAGAAGCGTAGAGAAGTTGATAGTGATTACAGTGATGGTGAATCTAGGGAGAGGGATAGAAAGCGGCACAAGAAAGAAGATGGTGATTACAAGAAGAGGGAGAGGGAAAGGAGTGTCAGCAAGCCAATCAGGCAATCCGAGGAACGTGAAGGGAGCCCAAGAAAAAAGAGTGTCGGAGATGATTCAGATACCAAAGATGGAGAGAAAAAACCTACCCGTGAAGAGGAGATGGAAAATGAACAAAAGAGGTTGGATGAAGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCTAAGAAGGAAGAAAGAGGAAGCAGAAAGAGAAAAGCATGGCGAAGTAAGTACTAATGAACCTGAGTCTGGAAAGACCTGGACACTAGAAGGGGAATCCGATGATGAAGAAGGACCGGGTACTGAGAAGCATGATACAGGTATGGATGTAGATGAAGATGTCGAACCTGCTGATACGGAACCTAAAGATGTGATGGTGGTAGACACTGATAATGGGACAATTGCATCTGATCTACAGGAGGGAACTGTTGGTACACCTGAAGATGAGGAAATAGATCCATTGGATGCTTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTGAACAATGCTGTGACATCAGTAGTTTCTGATAAAGCCATTGACATAAAAGCCAAAGATAAAGGGAATGAGCAAAGTCGAGGTGCACAGTCAAGGAAAGGTTCAAATAAGTCTATTGGCAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGCTGATGATGAAGTTGAGAGGGATCCATTGGATGAAGATGATGACGAGTTCATGAAAAGAGTGAAGAAAACAAAAGCTGAGAAGCTTTCTTTAGTTGACCATTCAAAGATTGACTATGAACCATTCAAGAAAACTTTTTATATTGAGGTGAAGGAGATCTCGAAGATTACTCCAGAAGAAGCTGCAGCATACAGGAAGCAGTTGGAATTGAAGATACATGGAAAGGATGTGCCAAAGCCAATAAGATCATGGCACCAGACTGGCCTTGCTAGCAAAATTTTGGAGACAATAAAGAAGATGAACTTTGACAAGCCTATGCCTATTCAAGCTCAGGCACTCCCTGTAATCATGAGCGGTCGAGATTGCATAGGGATTGCTAAAACTGGGTCAGGCAAAACACTTGCATTTGTTCTGCCAATGCTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCCGGAGATGGACCTATTGGGCTTATTATGGCCCCTACAAGGGAACTTGTTCAACAGATTCACAGTGATATAAAAAAATTTGCGAAGGTGCTAGGTCTCAGGTGTGTGCCTGTGTATGGAGGCTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAACGAGGTGCTGAGATAGTTGTTTGTACGCCAGGTAGGATGATTGACATATTATGCACCAGTAGTGGAAAAATAACTAACTTGCGTAGAGTCACTTATCTGGTCATGGATGAGGCTGATCGAATGTTCGACATGGGCTTTGAACCTCAAATTACACGAATTGTTCAGAATATTCGTCCAGATCGTCAAACAGTTCTTTTCTCTGCTACATTCCCCCGTCAGGTTGAAATTCTGGCTCGTAAGGTTTTGAATAAACCTGTTGAAATACAAGTTGGCGGGAGGAGTGTAGTGAACAAAGACATATTACAGTTAGTTGAGGTGAGACCAGATAATGAAAGGTTCCTTAGACTCTTAGAATTATTAGGGGAATGGTACGAGAAAGGGAAGATCCTGATATTTGTTCACTCCCAGGAGAAATGTGATAGTCTGTTCAAGGATCTGCTCAGGCATGGTTATCCATGCCTTTCTCTTCATGGGGCTAAGGACCAGACAGACCGAGAATCCACAATATCTGACTTTAAAAGCAATGTCTGCAATTTGTTGGTTGCAACAAGTATTGCTGCCAGGGGATTAGATGTTAAGGAGCTAGAATTGGTGATCAATTTTGATGTTCCTAACCACTATGAAGATTATGTACACCGTGTTGGGCGCACTGGACGAGCTGGCCGCAAGGGTTGTGCCATTACATTTATATCTGAGGAAGAGGCAAGATATGCACCTGATCTGTTGAAAGCCTTGGAATTATCTGAGCAGACTGTTCCCAATGATCTGAAAACTCTTGCTGATAGCTTTATGGTAAAGGTGAACCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGAAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTAAGGAGAGCAGCAAAGAAAGCACAAGCCAAGGAATATGGGTTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGAAGGTATTCGGAAGGCAGGAGGTGATATCTCACAGCATCCTGCTCTTGCACAGATTCTTGCCGCCACTAAAGTTAATGCTCCTGCATTGCCTACTCCCATCTCTGCTGCTCAGCTGATTTCGAATGGTGGACTACCTGTTTCTTTTCCGTCTGTTCTTGGTCTCCAGACCCCAACAGTCTTGCCTGGGACTGGGCTACCCCTTGCTGCAAATGATGGGGCAGCTCGAGCAGCACTAGCTGCGATGAACCTGCATCGCAACATAGAAAAAATACAGTCAGAAGCATTACCGGAGCATTATGAGGCTGAGTTGGAAATAAATGATTTCCCCCAGAATGCTCGCTGGAAAGTTACTCATAAGGAAACATTAGGTCCCATATCTGATTGGACAGGAGCTGCCATTACCACCAGGGGGCAGTTCTTCCCACCTGGAAAGATCCCAGGACCTGGAGAACGCAAACTCTACTTGTTCATTGAAGGTCCTACTGAGCAGTCTGTTAAGACAGCTAAAGCACAATTGAAACGTGTTTTGGAAGACATCACAAATCAGGCTTTGCAACTTCCAGGTGGAAATCAACCGGGCAAATACTCTGTTGTGTAA 3402 0.4433 MDEGKHKSRKEIHELKDGDSKRSHRDRDRDRDRTGERGKDKNDGRHRDREKRDRESRRHERERSTDSEDKHDRDREKRKDKDKDVDRERGREKKRERDRDRDDRERTDRVREKEKEREKKEDKERIRERERERRDHEREKEKERERVRRAREREKRREVDSDYSDGESRERDRKRHKKEDGDYKKRERERSVSKPIRQSEEREGSPRKKSVGDDSDTKDGEKKPTREEEMENEQKRLDEEMEKRRRRVQEWQELRRKKEEAEREKHGEVSTNEPESGKTWTLEGESDDEEGPGTEKHDTGMDVDEDVEPADTEPKDVMVVDTDNGTIASDLQEGTVGTPEDEEIDPLDAFMNSMVLPEVEKLNNAVTSVVSDKAIDIKAKDKGNEQSRGAQSRKGSNKSIGRIIPGEESDSDYADDEVERDPLDEDDDEFMKRVKKTKAEKLSLVDHSKIDYEPFKKTFYIEVKEISKITPEEAAAYRKQLELKIHGKDVPKPIRSWHQTGLASKILETIKKMNFDKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDILQLVEVRPDNERFLRLLELLGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLLKALELSEQTVPNDLKTLADSFMVKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQILAATKVNAPALPTPISAAQLISNGGLPVSFPSVLGLQTPTVLPGTGLPLAANDGAARAALAAMNLHRNIEKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISDWTGAAITTRGQFFPPGKIPGPGERKLYLFIEGPTEQSVKTAKAQLKRVLEDITNQALQLPGGNQPGKYSVV 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium489g00012 1133 Pfam Helicase conserved C-terminal domain 729 837 IPR001650 -
Vium489g00012 1133 PANTHER RNA HELICASE 438 915 - -
Vium489g00012 1133 Pfam DEAD/DEAH box helicase 520 691 IPR011545 GO:0003676|GO:0005524
Vium489g00012 1133 MobiDBLite consensus disorder prediction 410 425 - -
Vium489g00012 1133 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 650 658 IPR000629 -
Vium489g00012 1133 Coils Coil 227 264 - -
Vium489g00012 1133 Gene3D - 705 880 IPR027417 -
Vium489g00012 1133 CDD SF2_C_DEAD 716 846 - -
Vium489g00012 1133 MobiDBLite consensus disorder prediction 1 343 - -
Vium489g00012 1133 MobiDBLite consensus disorder prediction 374 388 - -
Vium489g00012 1133 Coils Coil 110 157 - -
Vium489g00012 1133 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 495 523 IPR014014 GO:0003724
Vium489g00012 1133 MobiDBLite consensus disorder prediction 911 925 - -
Vium489g00012 1133 FunFam probable ATP-dependent RNA helicase DDX17 457 707 - -
Vium489g00012 1133 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 876 IPR027417 -
Vium489g00012 1133 CDD DEADc_DDX46 484 705 - -
Vium489g00012 1133 SMART helicmild6 756 837 IPR001650 -
Vium489g00012 1133 CDD KH-I_AtRH42_like 1031 1132 - -
Vium489g00012 1133 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 706 IPR027417 -
Vium489g00012 1133 Gene3D - 447 704 IPR027417 -
Vium489g00012 1133 SMART ultradead3 514 719 IPR014001 -
Vium489g00012 1133 MobiDBLite consensus disorder prediction 280 303 - -
Vium489g00012 1133 MobiDBLite consensus disorder prediction 373 429 - -
Vium489g00012 1133 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 526 704 IPR014001 -
Vium489g00012 1133 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 732 876 IPR001650 -
Vium489g00012 1133 MobiDBLite consensus disorder prediction 1 272 - -
Vium489g00012 1133 MobiDBLite consensus disorder prediction 911 942 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium489g00012 Vium-Chr489 172069 177381 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium489g00012 482 857 Eukaryotic Initiation Factors Gene Family AT3G19760 31.842 9.08e-57 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium489g00012 K12811 - gmx:100784306 1696.02