Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4890g00003 ATGGGTACGCTTGGTAACACGGAAGTTTACAATCACGACCATGAAGATAATGATCCTGAAGAGTATCTTCATGGGGTGAATTTCTCGATCCAGAGAGGATTCAAGGCGAAACTGAAGGCGAGTTTGAAGGAAGCTTTGTTTCCTGATGATCCCTTCAGGCAGTTCAAGAACGAGGAGAAACGGACGAGGAGGGTGCTGAAGGGGGTGCAATACTTCATCCCTATCTTTGAGTGGCTACCGACGTATAATTGGCGTCTCTTTTGCTCTGACTTGATCGCAGGTTTAACCATATCAAGCCTTGCCATCCCTCAAGGCATTAGCTATGCCAAACTTGCAGACCTTCCTCCTCTCATTGGCCTTTATTCAAGCTTTGTCCCACCTCTGGTGTATGCTATTTTTGGGAGTTCAAGGCACATGGCTGTGGGGACGATAGCAGCAGCATCATTGCTTATTGGTCAAACCATACAAACTGTGGCAGACCCAAACGAGGATCCAACCTTGTATCTTCATTTAATTTTCACAACCACCTTTGTCACTGGTGTTTTCCAAGCTGCTTTGGGATTTTTCAGGCTGGGGATATTGGTGGACTTTTTCTCTCATTCCACCATCAATGGCTTCATGGGAGGGACAGCAGTGATTCTCATCCTCCAACAGCTAAAGGGCGTGTTTGGAATGATACATTTTTCACAGAAAACCAACTTGGTGGCGGTGGTAAAAAGCATCGTTAACAATAGACACGAGATTAGGTGGGAACCTACAGTTCTTGGAGTGGTCTTGCTTGCTTTCTTGCAATTTACCAAGCACTTGAGGAACAAGAAACCAAAACTCTTTTGGGTACAGGCTATAGGTCCAATGGTGACTGTAGTGGTTGCTGGTGTTTTCACCTACCTCGTCAAGGGCCAAAAGCATGGAATTCAAATTGTGGGACATTTAGACAAAGGATTAAATCCATTGTCCATCCACTATTTGAACTTTAATGGTAAATACTTATCAGCAGTTCTGCAAGCTGGAATTATCACAGGGGTGTTATCATTAGCAGAAGGAATAGCAATAGGAAGAAGCTTTGCTGTTACTGATAACACACCTCATGATGGGAACAAAGAAATGATCGCTTTTGGCCTCATGAACTTGTTCGGATCTTTTACTTCATGCTACTTGACTAGTGGACCATTTTCGAAGACTGCAGTGAATTACAATGCAGGGTGTAAGACTGCAATGGCAAATGTGATACAGGCAGTAATAATGGCACTGACACTGCAATTTTTGGCACCATTATTTGGCTACACCCCTCTTGTTGCTCTCTCAGTCATTATCATATCTGCCATGCTTGGACTCATTCATTACGAAGAAGTCGTTCATCTCTTCAAAGTTGACAAATTTGATTTTGTCATTTGCATGGCTGCTTTCCTCGGAGTTATCCTCATAAGCATGGATGTCGGTCTCATGATTTCTGTTGGACTAGGGGTTTTGAGAGCACTGTTATATGTGGCTAGACCAGCGCCATGCAAGCTTGGAAAGTTAGCAGAAGTTGGTTTATACAGAGACACAGAGCAATATAAAGTTTCAACATTTGCCGGGGTTCTTATTATTCAACTCGGTTCTCCCGTTTACTTTGCAAATTCTAATTACGTCAAAGAAAGGATTATGAGGTATATTCGAAGTGAACAAGCTTCTACCGGAGAGAATGTTGAACACATCGTACTTGATTTGTCAGGAGTAACATCCATTGACACAACTGCTATCAAAGCATTGGATGAGATGGTTAAAGTGTTGACAAAGAATGCAATTAAGATTTTGTTCGTAAATCCGAGGGTGGAGGTGTTGGAGAAGCTAATGTTATCAAAGTTTGTTGACAAAATTGGAAGGAAGCGTTCTATCAACATTGGATGA 1890 0.4254 MGTLGNTEVYNHDHEDNDPEEYLHGVNFSIQRGFKAKLKASLKEALFPDDPFRQFKNEEKRTRRVLKGVQYFIPIFEWLPTYNWRLFCSDLIAGLTISSLAIPQGISYAKLADLPPLIGLYSSFVPPLVYAIFGSSRHMAVGTIAAASLLIGQTIQTVADPNEDPTLYLHLIFTTTFVTGVFQAALGFFRLGILVDFFSHSTINGFMGGTAVILILQQLKGVFGMIHFSQKTNLVAVVKSIVNNRHEIRWEPTVLGVVLLAFLQFTKHLRNKKPKLFWVQAIGPMVTVVVAGVFTYLVKGQKHGIQIVGHLDKGLNPLSIHYLNFNGKYLSAVLQAGIITGVLSLAEGIAIGRSFAVTDNTPHDGNKEMIAFGLMNLFGSFTSCYLTSGPFSKTAVNYNAGCKTAMANVIQAVIMALTLQFLAPLFGYTPLVALSVIIISAMLGLIHYEEVVHLFKVDKFDFVICMAAFLGVILISMDVGLMISVGLGVLRALLYVARPAPCKLGKLAEVGLYRDTEQYKVSTFAGVLIIQLGSPVYFANSNYVKERIMRYIRSEQASTGENVEHIVLDLSGVTSIDTTAIKALDEMVKVLTKNAIKILFVNPRVEVLEKLMLSKFVDKIGRKRSINIG 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4890g00003 629 Pfam STAS domain 523 622 IPR002645 -
Vium4890g00003 629 ProSiteProfiles STAS domain profile. 517 629 IPR002645 -
Vium4890g00003 629 CDD STAS_SulP_like_sulfate_transporter 526 624 - -
Vium4890g00003 629 PANTHER SULFATE TRANSPORTER 37 624 IPR001902 GO:0016020|GO:0055085
Vium4890g00003 629 Pfam Sulfate permease family 87 468 IPR011547 GO:0016020
Vium4890g00003 629 ProSitePatterns SLC26A transporters signature. 116 137 IPR018045 GO:0008271|GO:0008272
Vium4890g00003 629 SUPERFAMILY SpoIIaa-like 518 622 IPR036513 -
Vium4890g00003 629 Gene3D STAS domain 499 627 IPR036513 -
Vium4890g00003 629 NCBIfam sulfate permease 74 624 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4890g00003 Vium-Chr4890 56709 64396 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4890g00003 24 623 Inorganic Solute Cotransporters AT5G19600 61.897 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4890g00003 K17471 - gmx:100789107 1016.53