Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4890g00001 ATGAGGAAGAAAACCTATTCCTTCCACTTCTCACTCTCACTCTCTCTTTCTCTCTTCGTCGTTGTGCTTTTGCAGTCACTCTGTGCCTCTGAAGGAATCTCCCACAATGGGCCTCTCACCGACGCGGAAGCCACCTACATCAAGCAGCGCCAGCTTCTGTACTACAAGGACGAGTTTGGTGACAGAGGAGAAAAAGTAACCGTAGATCCCTCTTTCCGCTTCGAGAACGACCGTTTGAGAAACGCTTACATAGCGTTACAGGCATGGAAGCAGGCCATTCTCTCTGATCCCAAAAACCTCACGCTAAACTGGGTGGGGCCCGATGTCTGCAACTACACCTACGTCTTCTGCGCTCCGGCACTTGACAACCCTAAGATCCGCACCGTCGCCGGAATCGACCTCAACCACGGCGACATTGCCGGATATCTCCCCGAGGAGCTCGGCTTGCTCACTGACCTTGCGCTTCTCCATATCAACACCAACCGCTTCTGCGGCACCGTGCCGCACAAGTTCGACAAGCTCAAACTCCTCTTCGAGCTGGATCTCAGCAACAACCGATTCGCTGGAAAGTTCCCCGACGTGGTGCTGCGTCTGCCGCAGCTCAAGTTCCTAGATCTGAGGTTCAACGAATTCGAAGGCACGGTCCCCAAGGAGCTCTTCGACAAGGACCTCGACGCCATTTTCATCAACGACAACCGCTTCGTGTTCGACCTGCCGGATAACTTTGGCAACTCGCCGGTGTCCGTGATCGTGCTGGCCAACAACCGCTTCCATGGCTGCGTGCCGGCTGGAATCGGCAACATGAAGGGGTTGAACGAGATTATTCTGATGAACAACGCTTTCAGGTCGTGCTTCCCCGCGGAGATAGGATTGTTGAAGAACTTGACGGTGTTCGATGTGAGCTTCAACCAGTTGTTAGGTCCTTTGCCTGACGCCATCGGAGGTGCCGTGAGTTTGGAGCAGCTCAATGTGGCTCATAATTTACTCTCTGGGAAGATTCCCGAGAGCATTTGCAAGCTTCCCAATCTCCAGAACTTTACTTTCTCTTACAACTTCTTCACCGGCGAGCCGCCCCGGTGTCTCGCTTTGCCGGCGGCTGACGACCGCCGCAACTGCCTACCGGCCAGGCCCTTCCAGCGCTCCGCAGGACAATGCAAGTCGTTTTTGTCACACCCTGTCGATTGCAAGTCTTTTAGGTGTAAGCCTTTTGTTCCTACCTTGCCTCCTCCTCCTCCACCATCACCACCATTGCCGTCACCGCCACCGTCGCCTGTTTATGTCCCCCGTTCCCCTCCGCCCCCACCACCGGTGTACTCGCCACCACCACCACCTCCAGTGTATTCGCCTCCTCCACCACCTCCAGTGTATTCGCCTCCACCGCCGCCGCCACCGCCTCCACCTCCGCCACCTTCACCACCTCCGCCTTCACCGCCCCCGCCAGTCTATTCTCCACCTCCGCCCCCACCTTCACCGCCACCACCATCACCACCTCCGCCATCCCCTCCACCGCCAGTCTATTCGCCACCTCCTCCTCCCCCATCCCCGCCACCACCAGTCTATTCGCCACCTCCTCCTCCCCCATCCCCGCCACCACCAGTCTATTCGCCACCTCCTCCTCCACCTTCACCGCCGCCACCTTCCCCGCCACCGCCCTCACCGGTTTATTGTGTAAGGTCTCCGCCACCACCTTCACCACCTCCGCCATCACCTCCACCTCCACCAAGTCCTGTATTCTCCCCACCACCACCTGTTCAATACTACTACAGTCCACCACCGCCACCACAACACTCGCCTCCCCCGCCCCCACCACACTCACCACCGCCACCACATTCACCGCCGCCTCCAGTTTATCCCTATCTGTCACCGCCCCCACCTCCTCCTGTTCACTCTCCACCTCCACCGGTCCATTCACCACCACCACCATCTCCTCCACCATGTATAGAACCGCCACCACCACCTCCCCCCTGTATAGAACCGCCTCCACCTCCGCCATCACCACCGCCTTGTGAAGAGCATTCGCCACCACCACCATCACCACATCCTGCACCTTACCTGCCACCGCCATCGCCATCACCACCACCTCCTCCAGTTCAATACAGTTCTCCTCCACCACCATCGTCGCCACCTGTTTATTATTACAACTCACCGCCGCCCCCACCTCCTTCGTCTCCACCACCAGCCCCTGTATATGAAGGGCCTTTGCCACCCGTCATAGGAGTCTCATATGCATCTCCTCCTCCACCTCCCTTTTATTGA 2256 0.578 MRKKTYSFHFSLSLSLSLFVVVLLQSLCASEGISHNGPLTDAEATYIKQRQLLYYKDEFGDRGEKVTVDPSFRFENDRLRNAYIALQAWKQAILSDPKNLTLNWVGPDVCNYTYVFCAPALDNPKIRTVAGIDLNHGDIAGYLPEELGLLTDLALLHINTNRFCGTVPHKFDKLKLLFELDLSNNRFAGKFPDVVLRLPQLKFLDLRFNEFEGTVPKELFDKDLDAIFINDNRFVFDLPDNFGNSPVSVIVLANNRFHGCVPAGIGNMKGLNEIILMNNAFRSCFPAEIGLLKNLTVFDVSFNQLLGPLPDAIGGAVSLEQLNVAHNLLSGKIPESICKLPNLQNFTFSYNFFTGEPPRCLALPAADDRRNCLPARPFQRSAGQCKSFLSHPVDCKSFRCKPFVPTLPPPPPPSPPLPSPPPSPVYVPRSPPPPPPVYSPPPPPPVYSPPPPPPVYSPPPPPPPPPPPPPSPPPPSPPPPVYSPPPPPPSPPPPSPPPPSPPPPVYSPPPPPPSPPPPVYSPPPPPPSPPPPVYSPPPPPPSPPPPSPPPPSPVYCVRSPPPPSPPPPSPPPPPSPVFSPPPPVQYYYSPPPPPQHSPPPPPPHSPPPPHSPPPPVYPYLSPPPPPPVHSPPPPVHSPPPPSPPPCIEPPPPPPPCIEPPPPPPSPPPCEEHSPPPPSPHPAPYLPPPSPSPPPPPVQYSSPPPPSSPPVYYYNSPPPPPPSSPPPAPVYEGPLPPVIGVSYASPPPPPFY 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4890g00001 751 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 19 517 - -
Vium4890g00001 751 MobiDBLite consensus disorder prediction 626 645 - -
Vium4890g00001 751 PRINTS Proline rich extensin signature 404 425 - -
Vium4890g00001 751 PRINTS Proline rich extensin signature 450 467 - -
Vium4890g00001 751 PRINTS Proline rich extensin signature 429 445 - -
Vium4890g00001 751 FunFam Leucine-rich repeat extensin-like protein 5 245 384 - -
Vium4890g00001 751 FunFam Leucine-rich repeat extensin-like protein 1 83 244 - -
Vium4890g00001 751 MobiDBLite consensus disorder prediction 449 621 - -
Vium4890g00001 751 Gene3D Ribonuclease Inhibitor 82 370 IPR032675 -
Vium4890g00001 751 MobiDBLite consensus disorder prediction 657 751 - -
Vium4890g00001 751 SUPERFAMILY L domain-like 83 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4890g00001 Vium-Chr4890 11479 14506 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4890g00001 33 400 Leucine-rich Repeat extension Gene Families AT3G24480 76.694 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4890g00001 - - gmx:106799218 718.383