Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4888g00001 ATGGCGCGGACAGTCTCTAACAACGACATCACCAACGATGAAACAGGCGATGACAGCAATGCTACAACGAAGGAAGAGGGCGAGGTCAAAGGTCGCGTGAGGAAGGGACCCTGGACCCCATCAGAAGACGCCATCCTTGTAGAGTACGTGAAGAAGCACGGTGAAGGGAATTGGAACTCCGTGCACAAGAATTCTGGGTTGTTCAGGTGCGGCAAAAGTTGCAGACTTCGCTGGGCAAACCATCTCAGGCCTAATCTCAAGAAAGGTGCATTCTCTCCTGAGGAAGAACAAATCATCATCGACCTTCATTCCAAGCTTGGAAACAAATGGGCCAGAATGGCCGCACAGTTACCTGGCAGGACCGACAATGAAATAAAAAACTTTTGGAACACCAGAATGAAAAGGCGTCAGAGAGCAGGGTTACCCATTTATCCTCCTGAGCTGCATGCAGAAGCCACTGCATTCAATCTACAACACCGCTACTTGGAAGACATACCTCATTCATCATTTGCTTTACTCCTATCTTCTTGTTACCCCAAGAAGCCCGATGACCCTGGCCAAACCAACGGTTTCAATGCCAATCCGCTGCAAAACCATCCTGATTCTGCCAACTTTTACATTAATCCAAGCCTGAAGCACTTCAAGTTTTCCAATGACAATGGTGGAAGTACAAATCTTGCTTTGCCATTATCTCCTCTTTCTCAATATGGATCATCATCATCCACCCTTCTTAACCACAGTTTTGGTGATCATGGCATTATATCAGGGTCCCCATATGAATCCTTTCCTTTGGTATCAGGGTCCACCCCCGACATCTCTTCCAACCAAACACCAACCCCTGCTTCGTCCTATGCTAGTGGTGTCGATGGCCTGATGGGATCTTCAACCATGGCTAATAATAATAATAATAACAATGACTACTATGAAGTTGCACCGTTGTCTCCTCCAGGAAACAGTGGACTGCTGGATGCTCTAGTGATGGAGGCTCAAGGACTTTCTCACATTGACAAGTCCAAGAATGAGGAGGACCCGACCCTTGCTGGAAAACTATCTTGTAAGAGAAAGAACATGGAATATGCGGATGAGGGACGCACTGAGCCTATGGTGTCAGCCATGAAGAAGAACAGTAGCAACTGTACTACTACTGAAAACCAGAGGGATGATGATAATAGCTTCTCTCAATTGTCAAAAGGGAAGAAAGTGATGAGAGAGGATCCGATGGAAGAGATGAACTCGATGGACGATGATTTGTTTAGTCTGCTGAATCAGTTTCCCTTAGAAACGCCAATGCCTGAGTGGTACCGTAGAGGGGAGAGTCAGTCATTGGGACTTGAAAATCAGCCGAATGCTTCACCACCTGACCCCGCTGATCAAGAGTATGCTTGGACTCTAGGAACTTGCTGGAACAACATGCCCAGCATATGCTAA 1428 0.4678 MARTVSNNDITNDETGDDSNATTKEEGEVKGRVRKGPWTPSEDAILVEYVKKHGEGNWNSVHKNSGLFRCGKSCRLRWANHLRPNLKKGAFSPEEEQIIIDLHSKLGNKWARMAAQLPGRTDNEIKNFWNTRMKRRQRAGLPIYPPELHAEATAFNLQHRYLEDIPHSSFALLLSSCYPKKPDDPGQTNGFNANPLQNHPDSANFYINPSLKHFKFSNDNGGSTNLALPLSPLSQYGSSSSTLLNHSFGDHGIISGSPYESFPLVSGSTPDISSNQTPTPASSYASGVDGLMGSSTMANNNNNNNDYYEVAPLSPPGNSGLLDALVMEAQGLSHIDKSKNEEDPTLAGKLSCKRKNMEYADEGRTEPMVSAMKKNSSNCTTTENQRDDDNSFSQLSKGKKVMREDPMEEMNSMDDDLFSLLNQFPLETPMPEWYRRGESQSLGLENQPNASPPDPADQEYAWTLGTCWNNMPSIC 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4888g00001 475 MobiDBLite consensus disorder prediction 1 37 - -
Vium4888g00001 475 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Vium4888g00001 475 MobiDBLite consensus disorder prediction 1 17 - -
Vium4888g00001 475 MobiDBLite consensus disorder prediction 437 457 - -
Vium4888g00001 475 MobiDBLite consensus disorder prediction 364 400 - -
Vium4888g00001 475 MobiDBLite consensus disorder prediction 18 37 - -
Vium4888g00001 475 Gene3D - 90 136 - -
Vium4888g00001 475 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Vium4888g00001 475 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Vium4888g00001 475 FunFam MYB-related transcription factor 34 87 - -
Vium4888g00001 475 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Vium4888g00001 475 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Vium4888g00001 475 FunFam Transcription factor MYB97 90 164 - -
Vium4888g00001 475 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Vium4888g00001 475 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 8 441 - -
Vium4888g00001 475 MobiDBLite consensus disorder prediction 370 389 - -
Vium4888g00001 475 SUPERFAMILY Homeodomain-like 32 129 IPR009057 -
Vium4888g00001 475 CDD SANT 37 82 IPR001005 -
Vium4888g00001 475 CDD SANT 90 131 IPR001005 -
Vium4888g00001 475 Gene3D - 35 87 - -
Vium4888g00001 475 SMART sant 87 135 IPR001005 -
Vium4888g00001 475 SMART sant 34 84 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4888g00001 Vium-Chr4888 840 3828 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4888g00001 33 475 MYB Transcription Factor Family AT2G32460 38.685 1.20e-81 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium4888g00001 Myb_DNA-bind_6 7.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4888g00001 K09422 - gmx:100798860 707.597