Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4887g00004 ATGGTCGAAACCAGACGCAGCAGCTCTTCCTCTTCCAAGCGCTCTCTCTCTTCCTCCTCTCCCCCCAACAACACCAAAAGATCCAAGGTTTCCGAGGATTCCTCATCAACAACCGTGCCCTCCGTAGCTCCGGTCAACGAATCTGGACCCGCCAATGAATCTGCCGAACCGGAGCTGCGGCCCTCTGATCTACCCGATACGGCGTCGTTGAAGGCCGTCGATGGGTGTGATGCGATTTCGCCTGATAAATCTCCGTCTACACCTGTTGAGGGGGAGGCTTTGGTGTCCCCTCAGTGTCTAGGTGAAACAGCGGAGAAATCGAAGGGGGCTGGGGCGGCGGCGGCGGCGACTGTGTCCGCGGTTGGTCGGTCGAAGAAACGCCCTACGAAATTGAACCCCAAGGTTGCTTGGGCAAAGCTCCTTTCACAGTGTTCTCAGAATCCTCATGTGCCCATAAGTGATCTTAGCTTCACTGTTGGTCAAGGTCGTAATTGTAATTTATGGCTTAAAGATCCCACTGTTGGTAATATGTTGTGCAAGTTGAGCCACATAGAGCGTGGAGGCTCGTCTGTTGCATTACTTGAAATCACAGGGGGCAAAGGTTCTATTCAAGTTAATGGCAGAACTCATAGAAAGAATACCCGATTGATTTTAAGTGGAGGAGATGAGGTGGTCTTTGGTTCATCTGGCAAGCATGCTTATATCTTTCAGCAGCTCACAAGTAACAATATTAGTCATGCTGGTATACCTTCTTCCATGAGTATTTTAGAAGCCCAGAGTGCTCCCATAAATGGAGCGCAAGTTGAAGCTAGATCTGGTGATCCTTCTGCCGTTGCTGGAGCATCAATATTGGCCTCTTTATCTAATCTTCATAAAGACTTATCTCTCCTTTCATCTCCTGCTAAAAATGGAAAGAATGTGCAACAGAACACTGACATTTCATCACTACCTTCTGGCAATGGGGACGATGTGCCTGACAGTGAAATGAAGGATGCCACCAGTAAAGATGTACCATCATCTGGAGTTTTCTCTGCTGACAAAACTGTTCTAGCATCCTCTAACACTGTTAATGAAAATCCCAGCATTGACGCAACTGAAGTTGACACAACTGTGGATGCTGATGTTGGGAAGGTAGCTGCTGCTACATATGAATTTAGGCCATTACTGCGCATGCTTGCTGGCTCATGTCCTGAACTTGATTTAAGTTGTGGCATTACTAAGATATTGGAAGAGCGAAGGGAATTAAGAGAACTCCTTAAAGATGTTGATACCCCAACAATATTGGCTTCAACCAGGCGGCAAGCATTCAAGGACAGTTTAGAACAGAGAATTCTCAAATCTGAGGATATTGATGTCTCTTTTGAAACTTTCCCCTATTATCTGAGTGATACAACAAAGAGTGTTTTGATCGCTTCTACATTTATTCATTTGAAGTGCAATGGCTTTGCAAAATATGCTTCCGACCTCCCATCCGTTTCTCCACGAATATTGCTATCTGGTCCTGCAGGTTCGGAAATATATCAGGAGACTTTGTGCAAGGCACTAGCAAAGCATTTTGGTGCCAGGCTACTGATTGTGGATTCTCTTTCATTGCCCGGTGGAGCTCCTGCAAAAGAAGTAGATTCTGCTAAAGAAAGTTCCAGACCGGAAAGGCCATCTGTGTTTGCCAAGAGAAGTTCCCAGACTGCCACATTACATCACAAGAAACCAGCGTCCAGTGTTGACGCTGAAATTATAGGTGGATCCACGCTAAGTTCTCAAGCTATGCTGAAGCAAGAGGTTTCCACTGCATCGTCAAAAGGGACTACTCTTAAAGAGGGTGATAGAGTAAAATTTGTTGGAAATTTTCCTTCTGCCGTCTCGGCACTACCAAATTATCCTTCAAGGGGACCAAGCTATGGCTCTCGGGGTAAAGTTATGCTTGCTTTTGAAGATAATGGGTCTTCAAAAATTGGGGTTAGGTTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGCCTTTGTGAAGATGATAGAGGGTTCTTTTGTTCGGCAAATCATTTACTAAGGGTAGATGGCTCCGGAGGGGATGATACGGACAAAGTTGCAATAAATGATATCTTCGAGGTTACCTCTAATCAGAGTAAAAGTGGTCCATTAGTGTTGTTCATTAAAGATATAGAGAAGACAATGGTTGGGAACTATGATGTTTTGAAAAATAAATTCGAAAGCTTGCCACCAAATGTTGTCGTTATTGGCTCTCATACTATGCTTGACAGTAGAAAGGAGAAGACCCAACCTGGTGGCCTTCTGTTTACCAAGTTTGGGAGCAATCAGACAGCACTACTCGATCTTGCCTTCCCGGATAACTTTAGTAGACTACATGATCGGAGCAAAGAAACCCCTAAAGTAATGAAGCAACTTGGGCGACTTTTCCCAAACAAAGTGACAATACAGCTGCCTCAGGATGAGAGTTTACTTTCCGATTGGAAGCAACAATTAGAACGTGACATTGAAACTATGAAAGCTCAGTCCAATATTGTCAGTGTTCGCACAGTTCTCAACAGGATTGGACTGGATTGCCCTGACCTTGAGACTCTTTGCATCAAAGATCAAACCCTAGCTACTGAAAGTGTGGAGAAGATCGTTGGCTGGGCTATAAGTTACCATTTTATGCATTCATCTGAAGCTTCTACCAAAGATTCTAAGCTTGTGATATCTGCAGAAAGCATTAATTATGGGCTTAACATTCTACATGGCATTCAAAATGAGAATAAAAGCTTGAAAAAATCACTCAAGGATGTGGTTACTGAGAATGAGTTTGAGAAGAAGCTGCTTGGTGATGTTATTCCACCAACTGATATTGGGGTCACATTTGATGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTGAAGGAATTGGTTATGCTTCCTCTTCAGAGGCCTGAATTATTTTGCAAAGGACAGCTCACAAAGCCTTGCAAGGGAATATTGCTTTTTGGGCCCCCTGGAACAGGAAAAACAATGCTTGCAAAGGCTGTAGCTACTGAAGCTGGAGCAAATTTCATTAACATTTCAATGTCCAGCATTACTTCAAAGTGGTTTGGTGAAGGAGAAAAATATGTAAAAGCAGTTTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGATGAGGTTGATAGTATGCTAGGAAGACGTGAAAACCCCAGTGAGCACGAGGCTATGCGAAAAATGAAAAATGAGTTTATGGTTAATTGGGATGGTTTGTGTACTAAAGATAAAGAGCGAGTACTTGTTCTTGCTGCTACAAACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGCGGCTTCCAAGACGATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGGAAAAATTCTCAGAGTCATTTTAGCGAAAGAAGATTTGGCACCTGATGTTGATTTTGAAGCAATGGCTAATATGACTGATGGATATTCTGGGAGTGATCTAAAGAATCTTTGCACAGCAGCTCACTGCCCAATACGAGAGATCTTAGAGAAAGAAAAGAAGGAGAAAAGCTTAGCAGTATCTGAGAACAAACCTTTACCTGGATTGTGTGGCAGCTCCGACATTCGGCCTTTGAAGATTGATGATTTTAGATATGCACATGAGCAGGTGTGTGCGAGCGTGTCATCAGAATCAACAAATATGAATGAACTACTCCAATGGAATGATCTCTACGGAGAAGGAGGGTCAAGAAAAATGAGATCTTTGAGCTATTTCATGTAA 3768 0.4326 MVETRRSSSSSSKRSLSSSSPPNNTKRSKVSEDSSSTTVPSVAPVNESGPANESAEPELRPSDLPDTASLKAVDGCDAISPDKSPSTPVEGEALVSPQCLGETAEKSKGAGAAAAATVSAVGRSKKRPTKLNPKVAWAKLLSQCSQNPHVPISDLSFTVGQGRNCNLWLKDPTVGNMLCKLSHIERGGSSVALLEITGGKGSIQVNGRTHRKNTRLILSGGDEVVFGSSGKHAYIFQQLTSNNISHAGIPSSMSILEAQSAPINGAQVEARSGDPSAVAGASILASLSNLHKDLSLLSSPAKNGKNVQQNTDISSLPSGNGDDVPDSEMKDATSKDVPSSGVFSADKTVLASSNTVNENPSIDATEVDTTVDADVGKVAAATYEFRPLLRMLAGSCPELDLSCGITKILEERRELRELLKDVDTPTILASTRRQAFKDSLEQRILKSEDIDVSFETFPYYLSDTTKSVLIASTFIHLKCNGFAKYASDLPSVSPRILLSGPAGSEIYQETLCKALAKHFGARLLIVDSLSLPGGAPAKEVDSAKESSRPERPSVFAKRSSQTATLHHKKPASSVDAEIIGGSTLSSQAMLKQEVSTASSKGTTLKEGDRVKFVGNFPSAVSALPNYPSRGPSYGSRGKVMLAFEDNGSSKIGVRFDKSIPDGNDLGGLCEDDRGFFCSANHLLRVDGSGGDDTDKVAINDIFEVTSNQSKSGPLVLFIKDIEKTMVGNYDVLKNKFESLPPNVVVIGSHTMLDSRKEKTQPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKVMKQLGRLFPNKVTIQLPQDESLLSDWKQQLERDIETMKAQSNIVSVRTVLNRIGLDCPDLETLCIKDQTLATESVEKIVGWAISYHFMHSSEASTKDSKLVISAESINYGLNILHGIQNENKSLKKSLKDVVTENEFEKKLLGDVIPPTDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPSEHEAMRKMKNEFMVNWDGLCTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRGKILRVILAKEDLAPDVDFEAMANMTDGYSGSDLKNLCXTAAHCPIREILEKEKKEKSLAVSENKPLPGLCGSSDIRPLKIDDFRYAHEQVCASVSSESTNMNELLQWNDLYGEGGSRKMRSLSYFM 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4887g00004 1256 ProSitePatterns AAA-protein family signature. 1095 1114 IPR003960 GO:0005524|GO:0016887
Vium4887g00004 1256 MobiDBLite consensus disorder prediction 536 572 - -
Vium4887g00004 1256 SUPERFAMILY SMAD/FHA domain 137 231 IPR008984 GO:0005515
Vium4887g00004 1256 MobiDBLite consensus disorder prediction 298 321 - -
Vium4887g00004 1256 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 950 1125 - -
Vium4887g00004 1256 Pfam ATPase family associated with various cellular activities (AAA) 992 1121 IPR003959 GO:0005524|GO:0016887
Vium4887g00004 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 951 1230 IPR027417 -
Vium4887g00004 1256 SMART AAA_5 988 1125 IPR003593 GO:0016887
Vium4887g00004 1256 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 434 1255 - -
Vium4887g00004 1256 MobiDBLite consensus disorder prediction 298 340 - -
Vium4887g00004 1256 MobiDBLite consensus disorder prediction 553 568 - -
Vium4887g00004 1256 Gene3D - 950 1230 IPR027417 -
Vium4887g00004 1256 MobiDBLite consensus disorder prediction 1 100 - -
Vium4887g00004 1256 Gene3D - 136 246 - -
Vium4887g00004 1256 Gene3D - 1124 1218 - -
Vium4887g00004 1256 MobiDBLite consensus disorder prediction 1 48 - -
Vium4887g00004 1256 CDD RecA-like_ATAD1 955 1121 - -
Vium4887g00004 1256 Pfam AAA+ lid domain 1145 1181 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4887g00004 Vium-Chr4887 37617 50515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4887g00004 951 1195 Calmodulin-binding Proteins AT3G56690 38.492 1.30e-39 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4887g00004 - - gmx:100801477 2178.67