Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4884g00020 ATGGAGACGGAGGAGGAGCTCGTTCCCGATCCCAAACCGGAGGAACAGACCTTGCCGCTTCAGAACGGGGACTCTGACCAGCGCTGCGCCAAGAAGCCCAAGGTTGACGAGGACGCCGAATTGAAGAGAGTGGCCGAGATTGTTCTCGTTCTCTCCACCATGGCCTCCGTGCGTGCGGGGAGGAAGCCCTCCGACGCTGAGGTCGAGCTCATGAGAGAGGCGCGCGCTAAGCTCGCCAGCCTCTGCCAGGGTTTGGCTCCCAAGGATATTGTAGCCAGGGAAGCAATTGGAACCGTTATCGAGGATCTCGGATTGCACTCCAAGCTTAAAGACCAGAGGCTAGGGTTTCGAACTCCGAAGATGTCTATTGCCGAAAGGTATTCACATGCTAAGTGGAAGATGGAGGAAGCAAAGAAGTTTTCTGCACCTTCTACAACACATACATCTCAACCCTTACAATCAAACATTGGTGGACCTGTTGACAATCGTGTGCCATCACATGTTCGAATGTTCCCTTCTGATAAACCAAGCCAGCCAGCAATCCCTTCTATGGGTACCGTAGTGTCTATTCCTCCCCATGTTTCTGCAGGATCTTCTGCAGTATTGCAATACCAGTCAACTGGCAATGAAGTAAGACCACCTATGGTTTCTGGTGTGATGCCTAGCGGTCACTTGGGGAGAAATTCATCTTCCTTAGTATTGCCTAAAGCTGAACATCCACAGTTCAAAGTTGATGGAGGATCAAATGGGTCTTCTTCTTATTTGCTACAAGTCCAAGCAAATTCATCAGCAAACCAACCTTTGGTGAATGCTCCAGCATGGTCTATACCGACTCAGGCTGCTTCAATAGCAAGAACTGCATCAGAAAACAAGGTGCCTGCTACTACCTTTGTGAAGGTTGAAGGAACATCGGACATAACTGTATCAAGGGCAGGGCCTCAAATAACAACAGACCCGAGCTTTAGACCATTTATAACTCCAACAGCTTCTGTAAATTTGTCTACTGTGCACCAGCCTTTGCAGGCCACGAACATTGTTCAGCCTCCTTTGATTCCCAGTCACACTGATATTGCAAAGGTTGTCCAGAAAGTGTTACAACCAAAGCTTCCCAGCCATCCCACTTGGATTCCTCCATCAAGGGATTATATGAATAAGGCTTTGACATGCCAGATGTGTGAGCTCAGTGTTCAGGAGGTTGATACTGTGCTTCTTTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGTCTGCAGCCCTCGGTCTTGAGAGGAATTCATAACAGAGTGGATTGGCACTGTATGAGGTGCTTGAGTTTAAGTGGTGGAAAGCCTTTGCCACCAAAGTATGGTCGTGTCATGAGATCGTCAAGCACACCACCAAAATTGCCCTCTAATATTGGTGGTATTCAAGCTTGTTCTGAGAATAAAGCAGAGAACATAGAACCAAAGGTCCTGCAGATGGTAACAAATGGGAGCACTGTTCCAACGGTTGCCGGTGGCAATCACAATGTTGAGGTGCAATGTTACTCAAAGTTCGCTGATACCAAAGGTATACAAGGGATTGGCATTTCATCCAGCATTGAAGCTATTGATAAGAAGCCTGATCCAAACAACTCTATGAAATCTCTTAGTGCAGCCTCTAGTCCTTCTATTGGGATGCTAGGTGAATGCTCTACCAAACAAATAAATTCTAAGGTTTTGACCAGTAAAGAGACTTCAGAATGTGAGTCTCTTCCTAAATTATCTGAGCCAGCTAAATGTGAAAGTATACAATCATCTCAAAATTTTCAAGTGGAACAGACAATGTCAAAAGACAATGCTGAAGTATCACCAGATAAACACATTGATAGTAATATTATGAATAATAATCAGAAGGACTCTCTTGAAGGGGAAAATTTAACTTATGATATCAAGCGTGATGACAAAGATGCTGCACTTGCAAACATTGTTGGAATTTCTGGACCTAATACTGAAGGTAGACAGAACTCAGCATTATCATCAGATGGTTCACATGCTGTAGAATGGATTGGTGATGTAGTACAACTCGTAGATGAAAAGATTTTTTACCAATCTTGTTGTGTTGATGGAGTAACGTATAGGCTACAGGGTCATGCTCTTATTCCTACCAGCAATGGAAAACTAGCTCCTTCTAAACTCCAGTCTATGTGGGAAGATTGCAAAACTGGGTTAAAGTGGGTAAAGGTAACAAAGTGCTACTTTCCTGATGATTTGCCAGGGAATATTGGTCATCCGTGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTAGCTCTATTCAAGGTCCATGTGAAGTACTCCCGTCTGATAAATTTAAACAAGAAAATGACAGGCGATGCCAGTTAGGAATTGAGGAAAGTACTAGAATACAGCCCATTTTCCTTTGCAGGTGA 2433 0.4427 METEEELVPDPKPEEQTLPLQNGDSDQRCAKKPKVDEDAELKRVAEIVLVLSTMASVRAGRKPSDAEVELMREARAKLASLCQGLAPKDIVAREAIGTVIEDLGLHSKLKDQRLGFRTPKMSIAERYSHAKWKMEEAKKFSAPSTTHTSQPLQSNIGGPVDNRVPSHVRMFPSDKPSQPAIPSMGTVVSIPPHVSAGSSAVLQYQSTGNEVRPPMVSGVMPSGHLGRNSSSLVLPKAEHPQFKVDGGSNGSSSYLLQVQANSSANQPLVNAPAWSIPTQAASIARTASENKVPATTFVKVEGTSDITVSRAGPQITTDPSFRPFITPTASVNLSTVHQPLQATNIVQPPLIPSHTDIAKVVQKVLQPKLPSHPTWIPPSRDYMNKALTCQMCELSVQEVDTVLLCDACEKGFHLKCLQPSVLRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSSTPPKLPSNIGGIQACSENKAENIEPKVLQMVTNGSTVPTVAGGNHNVEVQCYSKFADTKGIQGIGISSSIEAIDKKPDPNNSMKSLSAASSPSIGMLGECSTKQINSKVLTSKETSECESLPKLSEPAKCESIQSSQNFQVEQTMSKDNAEVSPDKHIDSNIMNNNQKDSLEGENLTYDIKRDDKDAALANIVGISGPNTEGRQNSALSSDGSHAVEWIGDVVQLVDEKIFYQSCCVDGVTYRLQGHALIPTSNGKLAPSKLQSMWEDCKTGLKWVKVTKCYFPDDLPGNIGHPCISEVNEVYESNSDRTEMASSIQGPCEVLPSDKFKQENDRRCQLGIEESTRIQPIFLCR 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4884g00020 810 ProSiteProfiles BAH domain profile. 697 810 IPR001025 GO:0003682
Vium4884g00020 810 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 450 IPR013083 -
Vium4884g00020 810 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 22 810 - -
Vium4884g00020 810 MobiDBLite consensus disorder prediction 529 549 - -
Vium4884g00020 810 Pfam PHD-finger 389 437 IPR019787 -
Vium4884g00020 810 CDD PHD_SF 388 436 - -
Vium4884g00020 810 MobiDBLite consensus disorder prediction 600 627 - -
Vium4884g00020 810 CDD BAH 696 810 - -
Vium4884g00020 810 MobiDBLite consensus disorder prediction 1 36 - -
Vium4884g00020 810 Gene3D - 676 810 IPR043151 -
Vium4884g00020 810 SMART PHD_3 388 437 IPR001965 -
Vium4884g00020 810 ProSitePatterns Zinc finger PHD-type signature. 389 436 IPR019786 -
Vium4884g00020 810 SUPERFAMILY FYVE/PHD zinc finger 379 444 IPR011011 -
Vium4884g00020 810 ProSiteProfiles Zinc finger PHD-type profile. 386 439 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4884g00020 Vium-Chr4884 91239 98423 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium4884g00020 PHD 2.2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4884g00020 - - gmx:100807139 1335.09