Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4884g00019 ATGGAGACGGAGGAGGAGCTCGTTCCCGATCCCAAACCGGAGGAACAGACCTTGCCGCTTCAGAACGGGGACTCTGACCAGCGCTGCGCCAAGAAGCCCAAGGTTGACGAGGACGCCGAATTGAAGAGAGTGGCCGAGATTGTTCTCGTTCTCTCCACCATGGCCTCCGTGCGTGCGGGGAGGAAGCCCTCCGACGCTGAGGTCGAGCTCATGAGAGAGGCGCGCGCTAAGCTCGCCAGCCTCTGCCAGGGTTTGGCTCCCAAGGATATTGTAGCCAGGGAAGCAATTGGAACCGTTATCGAGGATCTCGGATTGCACTCCAAGCTTAAAGACCAGAGGCTAGGGTTTCGAACTCCGAAGATGTCTATTGCCGAAAGGTATTCACATGCTAAGTGGAAGATGGAGGAAGCAAAGAAGTTTTCTGCACCTTCTACAACACATACATCTCAACCCTTACAATCAAACATTGGTGGACCTGTTGACAATCGTGTGCCATCACATGTTCGAATGTTCCCTTCTGATAAACCAAGCCAGCCAGCAATCCCTTCTATGGGTACCGTAGTGTCTATTCCTCCCCATGTTTCTGCAGGATCTTCTGCAGTATTGCAATACCAGTCAACTGGCAATGAAGTAAGACCACCTATGGTTTCTGGTGTGATGCCTAGCGGTCACTTGGGGAGAAATTCATCTTCCTTAGTATTGCCTAAAGCTGAACATCCACAGTTCAAAGTTGATGGAGGATCAAATGGGTCTTCTTCTTATTTGCTACAAGTCCAAGCAAATTCATCAGCAAACCAACCTTTGGTGAATGCTCCAGCATGGTCTATACCGACTCAGGCTGCTTCAATAGCAAGAACTGCATCAGAAAACAAGGTGCCTGCTACTACCTTTGTGAAGGTTGAAGGAACATCGGACATAACTGTATCAAGGGCAGGGCCTCAAATAACAACAGACCCGAGCTTTAGACCATTTATAACTCCAACAGCTTCTGTAAATTTGTCTACTGTGCACCAGCCTTTGCAGGCCACGAACATTGTTCAGCCTCCTTTGATTCCCAGTCACACTGATATTGCAAAGGTTGTCCAGAAAGTGTTACAACCAAAGCTTCCCAGCCATCCCACTTGGATTCCTCCATCAAGGGATTATATGAATAAGGCTTTGACATGCCAGATGTGTGAGCTCAGTGTTCAGGAGGTTGATACTGTGCTTCTTTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGTCTGCAGCCCTCGGTCTTGAGAGGAATTCATAACAGAGTGGATTGGCACTGTATGAGGTGCTTGAGTTTAAGTGGTGGAAAGCCTTTGCCACCAAAGTATGGTCGTGTCATGAGATCGTCAAGCACACCACCAAAATTGCCCTCTAATATTGGTGGTATTCAAGCTTGTTCTGAGAATAAAGCAGAGAACATAGAACCAAAGGTCCTGCAGATGGTAACAAATGGGAGCACTGTTCCAACGGTTGCCGGTGGCAATCACAATGTTGAGGTGCAATGTTACTCAAAGTTCGCTGATACCAAAGGTATACAAGGGATTGGCATTTCATCCAGCATTGAAGCTATTGATAAGAAGCCTGATCCAAACAACTCTATGAAATCTCTTAGTGCAGCCTCTAGTCCTTCTATTGGGATGCTAGGTGAATGCTCTACCAAACAAATAAATTCTAAGGTTTTGACCAGTAAAGAGACTTCAGAATGTGAGTCTCTTCCTAAATTATCTGAGCCAGCTAAATGTGAAAGTATACAATCATCTCAAAATTTTCAAGTGGAACAGACAATGTCAAAAGACAATGCTGAAGTATCACCAGATAAACACATTGATAGTAATATTATGAATAATAATCAGAAGGACTCTCTTGAAGGGGAAAATTTAACTTATGATATCAAGCGTGATGACAAAGATGCTGCACTTGCAAACATTGTTGGAATTTCTGGACCTAATACTGAAGGTAGACAGAACTCAGCATTATCATCAGATGGTTCACATGCTGTAGAATGGATTGGTGATGTAGTACAACTCGTAGATGAAAAGATTTTTTACCAATCTTGTTGTGTTGATGGAGTAACGTATAGGCTACAGGGTCATGCTCTTATTCCTACCAGCAATGGAAAACTAGCTCCTTCTAAACTCCAGTCTATGTGGGAAGATTGCAAAACTGGGTTAAAGTGGGTAAAGGTAACAAAGTGCTACTTTCCTGATGATTTGCCAGGGAATATTGGTCATCCGTGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTAGCTCTATTCAAGGTCCATGTGAAGTACTCCCGTCTGATAAATTTAAACAAGAAAATGACAGGCGATGCCAGTTAGGAATTGAGGAAAGTACTAGAATACAGCCCATTTTCCTTTGCAGGCAGGTGTTTTGGGGGTTTTGGAACGGGGTTTTTCTTGTATTGGTGGGTAATTGA 2484 0.4428 METEEELVPDPKPEEQTLPLQNGDSDQRCAKKPKVDEDAELKRVAEIVLVLSTMASVRAGRKPSDAEVELMREARAKLASLCQGLAPKDIVAREAIGTVIEDLGLHSKLKDQRLGFRTPKMSIAERYSHAKWKMEEAKKFSAPSTTHTSQPLQSNIGGPVDNRVPSHVRMFPSDKPSQPAIPSMGTVVSIPPHVSAGSSAVLQYQSTGNEVRPPMVSGVMPSGHLGRNSSSLVLPKAEHPQFKVDGGSNGSSSYLLQVQANSSANQPLVNAPAWSIPTQAASIARTASENKVPATTFVKVEGTSDITVSRAGPQITTDPSFRPFITPTASVNLSTVHQPLQATNIVQPPLIPSHTDIAKVVQKVLQPKLPSHPTWIPPSRDYMNKALTCQMCELSVQEVDTVLLCDACEKGFHLKCLQPSVLRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSSTPPKLPSNIGGIQACSENKAENIEPKVLQMVTNGSTVPTVAGGNHNVEVQCYSKFADTKGIQGIGISSSIEAIDKKPDPNNSMKSLSAASSPSIGMLGECSTKQINSKVLTSKETSECESLPKLSEPAKCESIQSSQNFQVEQTMSKDNAEVSPDKHIDSNIMNNNQKDSLEGENLTYDIKRDDKDAALANIVGISGPNTEGRQNSALSSDGSHAVEWIGDVVQLVDEKIFYQSCCVDGVTYRLQGHALIPTSNGKLAPSKLQSMWEDCKTGLKWVKVTKCYFPDDLPGNIGHPCISEVNEVYESNSDRTEMASSIQGPCEVLPSDKFKQENDRRCQLGIEESTRIQPIFLCRQVFWGFWNGVFLVLVGN 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4884g00019 827 ProSiteProfiles BAH domain profile. 697 824 IPR001025 GO:0003682
Vium4884g00019 827 CDD BAH 696 814 - -
Vium4884g00019 827 Gene3D - 667 820 IPR043151 -
Vium4884g00019 827 SUPERFAMILY FYVE/PHD zinc finger 379 444 IPR011011 -
Vium4884g00019 827 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 450 IPR013083 -
Vium4884g00019 827 CDD PHD_SF 388 436 - -
Vium4884g00019 827 Pfam PHD-finger 389 437 IPR019787 -
Vium4884g00019 827 MobiDBLite consensus disorder prediction 600 627 - -
Vium4884g00019 827 MobiDBLite consensus disorder prediction 1 36 - -
Vium4884g00019 827 SMART PHD_3 388 437 IPR001965 -
Vium4884g00019 827 ProSitePatterns Zinc finger PHD-type signature. 389 436 IPR019786 -
Vium4884g00019 827 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 22 810 - -
Vium4884g00019 827 ProSiteProfiles Zinc finger PHD-type profile. 386 439 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4884g00019 Vium-Chr4884 91238 100055 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium4884g00019 PHD 2.2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4884g00019 - - gmx:100807139 1335.09