Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4884g00013 ATGTCAACAGACTTGGACAGACAGATAGAGCAGTTGAAGAGGTGTGAGCCTCTGAAGGAGTCTGAAGTGAAGGCTCTCTGCCTCAAAGCCATGGAAATCCTCGTCGAAGAGAGCAACGTTCAAAGGGTCGATGCTCCTGTCACCATATGTGGTGATATTCACGGTCAGTTTTATGACATGAAGGAGCTTTTCAAAGTGGGAGGGGATTGCCCCAAGACTAACTATTTGTTCCTTGGGGATTTTGTTGACAGAGGATTTTACTCGGTTGAAACATTTCTGCTTCTTCTCGCTCTTAAGGTGAGGTATCCAGATCGGATAACACTCATAAGGGGAAACCATGAAAGCCGTCAGATCACTCAGGTATATGGATTCTATGATGAGTGCCTTCGAAAGTATGGTTCAGTCAATGTATGGAGATATTGTACTGATATATTCGACTACTTAAGTTTGTCGGCCTTAATTGAAAACAAGATTTTCAGTGTTCATGGGGGCCTTCCTGCAATTTCTACATTGTATCAGATACGGACTATTGATCGGAAGCAAGAGGTACCTCATGATGGTGCCATGTGTGACCTACTATGGTCAGATCCAGAAGATATTGTGGATGGATGGGGTCTCAGTCCCCGTGGTGCTGGTTTCTTATTTGGTGGCAGTGTTGTTACTTCCTTTAACCACTCAAACAACATTGATTATATATGCCGTGCTCATCAGTTGGTGATGGAAGGATATAAATGGATGTTCAATAATCAGATAGTTACCGTCTGGTCAGCTCCAAATTATTGCTATAGATGTGGTAATGTAGCTGCAATTCTTGAGTTGGATGGAAATCTGAATAAGCAGTTCCGGGTGTTTGAAGCTGCTCCACAGGAATCAAGAGGGACACCTGCAAAGAAACCAGCACCAGATTACTTCCTATGA 918 0.4336 MSTDLDRQIEQLKRCEPLKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLXPAISTLYQIRTIDRKQEVPHDGAMCDLLWSDPEDIVDGWGLSPRGAGFLFGGSVVTSFNHSNNIDYICRAHQLVMEGYKWMFNNQIVTVWSAPNYCYRCGNVAAILELDGNLNKQFRVFEAAPQESRGTPAKKPAPDYFL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4884g00013 306 ProSitePatterns Serine/threonine specific protein phosphatases signature. 109 114 IPR006186 GO:0016787
Vium4884g00013 306 SMART pp2a_7 18 289 IPR006186 GO:0016787
Vium4884g00013 306 FunFam Serine/threonine-protein phosphatase 1 306 - -
Vium4884g00013 306 SUPERFAMILY Metallo-dependent phosphatases 4 293 IPR029052 -
Vium4884g00013 306 PRINTS Serine/threonine phosphatase family signature 75 102 IPR006186 GO:0016787
Vium4884g00013 306 PRINTS Serine/threonine phosphatase family signature 251 267 IPR006186 GO:0016787
Vium4884g00013 306 PRINTS Serine/threonine phosphatase family signature 172 199 IPR006186 GO:0016787
Vium4884g00013 306 PRINTS Serine/threonine phosphatase family signature 143 169 IPR006186 GO:0016787
Vium4884g00013 306 PRINTS Serine/threonine phosphatase family signature 46 73 IPR006186 GO:0016787
Vium4884g00013 306 PRINTS Serine/threonine phosphatase family signature 108 132 IPR006186 GO:0016787
Vium4884g00013 306 PRINTS Serine/threonine phosphatase family signature 229 249 IPR006186 GO:0016787
Vium4884g00013 306 CDD MPP_PP2A_PP4_PP6 4 289 - -
Vium4884g00013 306 Gene3D - 1 306 IPR029052 -
Vium4884g00013 306 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 306 IPR047129 GO:0004722
Vium4884g00013 306 Pfam Calcineurin-like phosphoesterase 46 238 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4884g00013 Vium-Chr4884 78643 84003 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4884g00013 25 224 Calmodulin-binding Proteins AT5G63870 36.214 2.35e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4884g00013 K15423 - fve:101293669 622.468