Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4884g00012 ATGGCATCTTCTTCAAACTCATGGATGAAGGAATATAATGAAGCACTGAAACTTGCTGACGATATCAGTGGTATGATTTCTGAGCAGAGTTCACTTCCTGCATCTGGACCAGAAATCCAGCGTCATTCATCTGCTATAAGGAGGAAGATTACTATATTGGGTACCCGGCTTGATAGCTTGCAATCTCTATTGTCCAAGCTTCCTGGAAAGCAGCCGCCCATATCTGAGAAGGAGGTGAATCGTCGGAAGGACATGCTCGCAAGTTTGAGATCAAAAGTTAATCAAATGGCTTCCACATTGAACATGTCAAACTTTTCAAATAGAGATAGTTTGCTTGGACCAGAAGGAAAACCAGATGCTATGGCCAGAACTGTTGGCCTGGACAACAACGGACTTGTTGGATTTCAACGGCAAATAATGAAAGAACAAGATGAGGGCCTTGAGCAATTGGAAGAGACTATAGCAAGCACAAAACATATTGCTTTGGCAGTGAATGAAGAGCTGAGTCTACACACTAGACTCATTGATGACTTGGATCAGCATGTAGATGTCACAGATTCGAGGCTTAGGCGGGTGCAGAAGAACTTAGCAATTTTAAACAAGCGAACCAGGGGTGGTTGTTCCTGCCTGTACATGCTTTTATCAGTTGTTGGTATAGTGTTTTTGGTTGTTGTCATTTGGCTATTGGTCAAATATTTGTGA 702 0.4245 MASSSNSWMKEYNEALKLADDISGMISEQSSLPASGPEIQRHSSAIRRKITILGTRLDSLQSLLSKLPGKQPPISEKEVNRRKDMLASLRSKVNQMASTLNMSNFSNRDSLLGPEGKPDAMARTVGLDNNGLVGFQRQIMKEQDEGLEQLEETIASTKHIALAVNEELSLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTRGGCSCLYMLLSVVGIVFLVVVIWLLVKYL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4884g00012 233 SMART tSNARE_6 132 199 IPR000727 -
Vium4884g00012 233 FunFam syntaxin-51 isoform X2 139 201 - -
Vium4884g00012 233 Coils Coil 147 167 - -
Vium4884g00012 233 CDD SNARE_Qc 140 197 - -
Vium4884g00012 233 PANTHER SYNTAXIN 34 221 IPR045242 -
Vium4884g00012 233 SUPERFAMILY SNARE fusion complex 128 198 - -
Vium4884g00012 233 Pfam SNARE domain 174 225 IPR000727 -
Vium4884g00012 233 Gene3D - 139 201 - -
Vium4884g00012 233 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 137 199 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4884g00012 Vium-Chr4884 73624 76226 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4884g00012 1 233 SNARE and Associated Proteins AT1G16240 71.795 1.47e-123 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4884g00012 K08503 - gmx:100782666 397.512