Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium4884g00011 | ATGGCATCTTCTTCAAACTCATGGATGAAGGAATATAATGAAGCACTGAAACTTGCTGACGATATCAGTGGTATGATTTCTGAGCAGAGTTCACTTCCTGCATCTGGACCAGAAATCCAGCGTCATTCATCTGCTATAAGGAGGAAGATTACTATATTGGGTACCCGGCTTGATAGCTTGCAATCTCTATTGTCCAAGCTTCCTGGAAAGCAGCCGCCCATATCTGAGAAGGAGGTGAATCGTCGGAAGGACATGCTCGCAAGTTTGAGATCAAAAGTTAATCAAATGGCTTCCACATTGAACATGTCAAACTTTTCAAATAGAGATAGTTTGCTTGGACCAGAAGGAAAACCAGATGCTATGGCCAGAACTGTTGGCCTGGACAACAACGGACTTGTTGGATTTCAACGGCAAATAATGAAAGAACAAGATGAGGGCCTTGAGCAATTGGAAGAGACTATAGCAAGCACAAAACATATTGCTTTGGCAGTGAATGAAGAGCTGAGTCTACACACTAGACTCATTGATGACTTGGATCAGCATGTAGATGTCACAGATTCGAGGCTTAGGCTTAACTTGAACATTTGTGTTGTGAAAACAGCGGGTGCAGAAGAACTTAGCAATTTTAAACAAGCGAACCAGGGGTGGTTGTTCCTGCCTGTACATGCTTTTATCAGTTGTTGGTATAGTGTTTTTGGTTGTTGTCATTTGGCTATTGGTCAAATATTTGTGATGCCATAA | 741 | 0.4197 | MASSSNSWMKEYNEALKLADDISGMISEQSSLPASGPEIQRHSSAIRRKITILGTRLDSLQSLLSKLPGKQPPISEKEVNRRKDMLASLRSKVNQMASTLNMSNFSNRDSLLGPEGKPDAMARTVGLDNNGLVGFQRQIMKEQDEGLEQLEETIASTKHIALAVNEELSLHTRLIDDLDQHVDVTDSRLRLNLNICVVKTAGAEELSNFKQANQGWLFLPVHAFISCWYSVFGCCHLAIGQIFVMP | 246 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium4884g00011 | 246 | PANTHER | SYNTAXIN | 34 | 190 | IPR045242 | - | |
| Vium4884g00011 | 246 | Coils | Coil | 147 | 167 | - | - | |
| Vium4884g00011 | 246 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 137 | 190 | IPR000727 | - | |
| Vium4884g00011 | 246 | SUPERFAMILY | SNARE fusion complex | 128 | 192 | - | - | |
| Vium4884g00011 | 246 | FunFam | syntaxin-51 isoform X2 | 139 | 198 | - | - | |
| Vium4884g00011 | 246 | Gene3D | - | 139 | 194 | - | - | |
| Vium4884g00011 | 246 | CDD | SNARE_Qc | 140 | 190 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium4884g00011 | Vium-Chr4884 | 73624 | 76229 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium4884g00011 | 1 | 190 | SNARE and Associated Proteins | AT1G16240 | 72.251 | 1.91e-97 | 283 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium4884g00011 | K08503 | - | gmx:100782666 | 334.339 |