Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4878g00008 ATGGAGAAAGTAGAGAAAAAGGGAAAAGAAACCAAAGAAAAGAAATGGACGCGGAAACTGGAGTTACCGTCGATAATGGGGAACCCGAAGAAAGAGGTTGCATGCGACGACGACGTATTGGCGTCGCCGAGGGATGTATTTGGGGTTCCCGTTTCGGGGACGGATTCGGACAGCACGGGGAGCAGCAACTACAATGGGCTTGGATCGCCCGGAGTGGTCTCAAATCGGTGCCTGAGAGACCCGCAAAACCAGCAATGGAAGACGATGATCGACGTGTTGAGGTTCAAGTCCGTTAGAAGATTCTCGACTATTCCTCTGCTTGGGGCGAGTTACGAGATCTCGCGCCGGAGCCTGAGGAACAAGTTGGCCCGTATTCGACCTGCCAATGACGACGATGATTTGGATTCTTGTATTGACATTGACGGCATTGCCACCAAGCCTTCTTGGAGAAACTTCAATTACGCTGACCTCGTCGCTGCAACCGACGATTTCAACCCTGAGAACATGATCGGAAAAGGTGGTCATGCTGAAGTCTACAAAGGATGCTTACCTGATGGTCGAGTTGTAGCAGTTAAGAGGCTAATGAGGAATGAAAAGGACATCGAGGATACAGTTGGTGATTTCTTGTCAGAGCTTGGAATCATTGCTCACATTAACCACCCAAATGCAACACGCTTGATAGGGTTTGGGATCGACCAAGGTCTCTATTTTGTTCTACAATTGGCCCCACATGGCAGCCTTGCCTCTCTGCTCTTTGGACCTCAATGTCTGGAATGGACTGTAAGGTTTAAAGTAGCTGTTGCGGTTGCAAAAGGATTACAGTATCTCCACCACGATTGCCCGAGAAGAATCATTCACAGAGACATCAAAGCCTCAAATATATTACTCAACGACAATAATGAAGCTGAGATATCAGACTTTGGATTGGCAAAGTGGCTCCCAGATAAATGGGCTCACCATGTTGTCTTCCCAATAGAAGGCACATTTGGGTATTTAGCTCCGGAGTACTTTATGCATGGAATAGTTGATGAGAAGACTGATGTTTTTGCATTTGGGGTTTTGTTACTCGAGCTTATAACAGGGCGTCGAGCAGTTGATTCCAATAGCAGGGAAAGTCTTGTGATCTGGGCCAAACCACTTCTGGATGCAAAGCTGGTCCAAGAATTGGTAGACCCCAGATTAGGAGCTAATTATGATTTGGCAAAAATGAAGTGTTGCATGGCAACGACTTCCTTGTGCATCCATCACATGTCCTCTAAGCGGCCATACATGGATCTGGTTGTGCAGCTACTGAAAGGAGAAGAAGTGCCAGTAGAACTCAATCACAACTCACCTACTCCAAGATCACTCTTGATAGATGCATGTGACCTGGAAGATTACACCTGCTCTAACTATTTGAACGACCTCAATCGCCACAGGCAATTACTCATGGAGTGA 1437 0.469 MEKVEKKGKETKEKKWTRKLELPSIMGNPKKEVACDDDVLASPRDVFGVPVSGTDSDSTGSSNYNGLGSPGVVSNRCLRDPQNQQWKTMIDVLRFKSVRRFSTIPLLGASYEISRRSLRNKLARIRPANDDDDLDSCIDIDGIATKPSWRNFNYADLVAATDDFNPENMIGKGGHAEVYKGCLPDGRVVAVKRLMRNEKDIEDTVGDFLSELGIIAHINHPNATRLIGFGIDQGLYFVLQLAPHGSLASLLFGPQCLEWTVRFKVAVAVAKGLQYLHHDCPRRIIHRDIKASNILLNDNNEAEISDFGLAKWLPDKWAHHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITGRRAVDSNSRESLVIWAKPLLDAKLVQELVDPRLGANYDLAKMKCCMATTSLCIHHMSSKRPYMDLVVQLLKGEEVPVELNHNSPTPRSLLIDACDLEDYTCSNYLNDLNRHRQLLME 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4878g00008 478 MobiDBLite consensus disorder prediction 1 20 - -
Vium4878g00008 478 Gene3D Phosphorylase Kinase; domain 1 138 239 - -
Vium4878g00008 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 284 296 IPR008271 GO:0004672|GO:0006468
Vium4878g00008 478 SUPERFAMILY Protein kinase-like (PK-like) 149 452 IPR011009 -
Vium4878g00008 478 Gene3D Transferase(Phosphotransferase) domain 1 243 443 - -
Vium4878g00008 478 ProSitePatterns Protein kinases ATP-binding region signature. 170 192 IPR017441 GO:0005524
Vium4878g00008 478 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 243 445 - -
Vium4878g00008 478 SMART serkin_6 164 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4878g00008 478 Pfam Protein kinase domain 167 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4878g00008 478 ProSiteProfiles Protein kinase domain profile. 164 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4878g00008 478 PANTHER OS08G0249100 PROTEIN 65 440 IPR046958 -
Vium4878g00008 478 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 139 241 - -
Vium4878g00008 478 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4878g00008 Vium-Chr4878 114626 117854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4878g00008 124 454 Trihelix Transcription Factor Family AT5G38560 38.889 1.10e-66 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vium4878g00008 Pkinase 6.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4878g00008 - - gmx:100794225 766.918